Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13835

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13830 and SGL_RS13835 are separated by 177 nucleotidesSGL_RS13835 and SGL_RS13840 are separated by 1 nucleotidesSGL_RS13840 and SGL_RS13845 are separated by 26 nucleotides SGL_RS13830: SGL_RS13830 - formyltetrahydrofolate deformylase, at 2,567,237 to 2,568,091 _RS13830 SGL_RS13835: SGL_RS13835 - carbonic anhydrase, at 2,568,269 to 2,568,973 _RS13835 SGL_RS13840: SGL_RS13840 - hypothetical protein, at 2,568,975 to 2,569,745 _RS13840 SGL_RS13845: SGL_RS13845 - NACHT domain-containing protein, at 2,569,772 to 2,573,491 _RS13845 Position (kb) 2568 2569Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2567.301 kb on + strandat 2567.309 kb on - strandat 2567.309 kb on - strandat 2567.309 kb on - strandat 2567.329 kb on - strand, within SGL_RS13830at 2567.329 kb on - strand, within SGL_RS13830at 2567.376 kb on - strand, within SGL_RS13830at 2567.376 kb on - strand, within SGL_RS13830at 2567.615 kb on - strand, within SGL_RS13830at 2567.755 kb on - strand, within SGL_RS13830at 2567.823 kb on - strand, within SGL_RS13830at 2567.930 kb on + strand, within SGL_RS13830at 2567.977 kb on - strand, within SGL_RS13830at 2568.129 kb on + strandat 2568.267 kb on - strandat 2568.300 kb on + strandat 2568.305 kb on + strandat 2568.307 kb on - strandat 2568.353 kb on - strand, within SGL_RS13835at 2568.353 kb on - strand, within SGL_RS13835at 2568.353 kb on - strand, within SGL_RS13835at 2568.383 kb on + strand, within SGL_RS13835at 2568.490 kb on + strand, within SGL_RS13835at 2568.508 kb on + strand, within SGL_RS13835at 2568.544 kb on - strand, within SGL_RS13835at 2568.579 kb on - strand, within SGL_RS13835at 2568.586 kb on + strand, within SGL_RS13835at 2568.586 kb on + strand, within SGL_RS13835at 2568.594 kb on - strand, within SGL_RS13835at 2568.656 kb on + strand, within SGL_RS13835at 2568.666 kb on + strand, within SGL_RS13835at 2568.890 kb on - strand, within SGL_RS13835at 2568.975 kb on - strandat 2569.071 kb on - strand, within SGL_RS13840at 2569.110 kb on + strand, within SGL_RS13840at 2569.144 kb on + strand, within SGL_RS13840at 2569.253 kb on - strand, within SGL_RS13840at 2569.515 kb on - strand, within SGL_RS13840at 2569.663 kb on + strand, within SGL_RS13840at 2569.919 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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2,567,301 + -0.7
2,567,309 - +0.1
2,567,309 - -0.5
2,567,309 - -0.9
2,567,329 - SGL_RS13830 0.11 -0.4
2,567,329 - SGL_RS13830 0.11 -0.0
2,567,376 - SGL_RS13830 0.16 +0.0
2,567,376 - SGL_RS13830 0.16 +0.4
2,567,615 - SGL_RS13830 0.44 -2.4
2,567,755 - SGL_RS13830 0.61 -1.8
2,567,823 - SGL_RS13830 0.69 -3.2
2,567,930 + SGL_RS13830 0.81 -3.7
2,567,977 - SGL_RS13830 0.87 -2.7
2,568,129 + -3.9
2,568,267 - -0.2
2,568,300 + -0.0
2,568,305 + +0.6
2,568,307 - -0.3
2,568,353 - SGL_RS13835 0.12 +0.5
2,568,353 - SGL_RS13835 0.12 -0.5
2,568,353 - SGL_RS13835 0.12 +0.2
2,568,383 + SGL_RS13835 0.16 -0.0
2,568,490 + SGL_RS13835 0.31 -0.1
2,568,508 + SGL_RS13835 0.34 +0.2
2,568,544 - SGL_RS13835 0.39 +0.4
2,568,579 - SGL_RS13835 0.44 +1.0
2,568,586 + SGL_RS13835 0.45 -0.7
2,568,586 + SGL_RS13835 0.45 +0.8
2,568,594 - SGL_RS13835 0.46 -0.2
2,568,656 + SGL_RS13835 0.55 -0.4
2,568,666 + SGL_RS13835 0.56 +0.3
2,568,890 - SGL_RS13835 0.88 +0.4
2,568,975 - -0.2
2,569,071 - SGL_RS13840 0.12 -0.5
2,569,110 + SGL_RS13840 0.18 +0.5
2,569,144 + SGL_RS13840 0.22 +0.7
2,569,253 - SGL_RS13840 0.36 +0.3
2,569,515 - SGL_RS13840 0.70 -0.5
2,569,663 + SGL_RS13840 0.89 +0.2
2,569,919 - +0.5

Or see this region's nucleotide sequence