Experiment: growth in full media bubbled with ambient air
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13830 and SGL_RS13835 are separated by 177 nucleotides SGL_RS13835 and SGL_RS13840 are separated by 1 nucleotides SGL_RS13840 and SGL_RS13845 are separated by 26 nucleotides
SGL_RS13830: SGL_RS13830 - formyltetrahydrofolate deformylase, at 2,567,237 to 2,568,091
_RS13830
SGL_RS13835: SGL_RS13835 - carbonic anhydrase, at 2,568,269 to 2,568,973
_RS13835
SGL_RS13840: SGL_RS13840 - hypothetical protein, at 2,568,975 to 2,569,745
_RS13840
SGL_RS13845: SGL_RS13845 - NACHT domain-containing protein, at 2,569,772 to 2,573,491
_RS13845
Position (kb)
2568
2569 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2567.301 kb on + strand at 2567.309 kb on - strand at 2567.309 kb on - strand at 2567.309 kb on - strand at 2567.329 kb on - strand, within SGL_RS13830 at 2567.329 kb on - strand, within SGL_RS13830 at 2567.376 kb on - strand, within SGL_RS13830 at 2567.376 kb on - strand, within SGL_RS13830 at 2567.615 kb on - strand, within SGL_RS13830 at 2567.755 kb on - strand, within SGL_RS13830 at 2567.823 kb on - strand, within SGL_RS13830 at 2567.930 kb on + strand, within SGL_RS13830 at 2567.977 kb on - strand, within SGL_RS13830 at 2568.129 kb on + strand at 2568.267 kb on - strand at 2568.300 kb on + strand at 2568.305 kb on + strand at 2568.307 kb on - strand at 2568.353 kb on - strand, within SGL_RS13835 at 2568.353 kb on - strand, within SGL_RS13835 at 2568.353 kb on - strand, within SGL_RS13835 at 2568.383 kb on + strand, within SGL_RS13835 at 2568.490 kb on + strand, within SGL_RS13835 at 2568.508 kb on + strand, within SGL_RS13835 at 2568.544 kb on - strand, within SGL_RS13835 at 2568.579 kb on - strand, within SGL_RS13835 at 2568.586 kb on + strand, within SGL_RS13835 at 2568.586 kb on + strand, within SGL_RS13835 at 2568.594 kb on - strand, within SGL_RS13835 at 2568.656 kb on + strand, within SGL_RS13835 at 2568.666 kb on + strand, within SGL_RS13835 at 2568.890 kb on - strand, within SGL_RS13835 at 2568.975 kb on - strand at 2569.071 kb on - strand, within SGL_RS13840 at 2569.110 kb on + strand, within SGL_RS13840 at 2569.144 kb on + strand, within SGL_RS13840 at 2569.253 kb on - strand, within SGL_RS13840 at 2569.515 kb on - strand, within SGL_RS13840 at 2569.663 kb on + strand, within SGL_RS13840 at 2569.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air remove 2,567,301 + -0.7 2,567,309 - +0.1 2,567,309 - -0.5 2,567,309 - -0.9 2,567,329 - SGL_RS13830 0.11 -0.4 2,567,329 - SGL_RS13830 0.11 -0.0 2,567,376 - SGL_RS13830 0.16 +0.0 2,567,376 - SGL_RS13830 0.16 +0.4 2,567,615 - SGL_RS13830 0.44 -2.4 2,567,755 - SGL_RS13830 0.61 -1.8 2,567,823 - SGL_RS13830 0.69 -3.2 2,567,930 + SGL_RS13830 0.81 -3.7 2,567,977 - SGL_RS13830 0.87 -2.7 2,568,129 + -3.9 2,568,267 - -0.2 2,568,300 + -0.0 2,568,305 + +0.6 2,568,307 - -0.3 2,568,353 - SGL_RS13835 0.12 +0.5 2,568,353 - SGL_RS13835 0.12 -0.5 2,568,353 - SGL_RS13835 0.12 +0.2 2,568,383 + SGL_RS13835 0.16 -0.0 2,568,490 + SGL_RS13835 0.31 -0.1 2,568,508 + SGL_RS13835 0.34 +0.2 2,568,544 - SGL_RS13835 0.39 +0.4 2,568,579 - SGL_RS13835 0.44 +1.0 2,568,586 + SGL_RS13835 0.45 -0.7 2,568,586 + SGL_RS13835 0.45 +0.8 2,568,594 - SGL_RS13835 0.46 -0.2 2,568,656 + SGL_RS13835 0.55 -0.4 2,568,666 + SGL_RS13835 0.56 +0.3 2,568,890 - SGL_RS13835 0.88 +0.4 2,568,975 - -0.2 2,569,071 - SGL_RS13840 0.12 -0.5 2,569,110 + SGL_RS13840 0.18 +0.5 2,569,144 + SGL_RS13840 0.22 +0.7 2,569,253 - SGL_RS13840 0.36 +0.3 2,569,515 - SGL_RS13840 0.70 -0.5 2,569,663 + SGL_RS13840 0.89 +0.2 2,569,919 - +0.5
Or see this region's nucleotide sequence