Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13785

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13780 and SGL_RS19255 are separated by 335 nucleotidesSGL_RS19255 and SGL_RS13785 are separated by 45 nucleotidesSGL_RS13785 and SGL_RS13790 are separated by 122 nucleotides SGL_RS13780: SGL_RS13780 - WD40 repeat domain-containing protein, at 2,556,814 to 2,558,319 _RS13780 SGL_RS19255: SGL_RS19255 - transposase, at 2,558,655 to 2,558,774 _RS19255 SGL_RS13785: SGL_RS13785 - pyridoxal phosphate-dependent aminotransferase, at 2,558,820 to 2,559,989 _RS13785 SGL_RS13790: SGL_RS13790 - citrate synthase, at 2,560,112 to 2,561,305 _RS13790 Position (kb) 2558 2559 2560Strain fitness (log2 ratio) -1 0 1at 2557.848 kb on - strand, within SGL_RS13780at 2557.885 kb on - strand, within SGL_RS13780at 2557.894 kb on + strand, within SGL_RS13780at 2557.928 kb on - strand, within SGL_RS13780at 2557.969 kb on - strand, within SGL_RS13780at 2558.028 kb on - strand, within SGL_RS13780at 2558.031 kb on + strand, within SGL_RS13780at 2558.365 kb on - strandat 2558.392 kb on - strandat 2558.511 kb on + strandat 2558.519 kb on - strandat 2558.762 kb on + strand, within SGL_RS19255at 2558.782 kb on + strandat 2560.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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2,557,848 - SGL_RS13780 0.69 +0.5
2,557,885 - SGL_RS13780 0.71 +0.4
2,557,894 + SGL_RS13780 0.72 -0.2
2,557,928 - SGL_RS13780 0.74 -0.8
2,557,969 - SGL_RS13780 0.77 +0.4
2,558,028 - SGL_RS13780 0.81 +0.1
2,558,031 + SGL_RS13780 0.81 +0.5
2,558,365 - -0.2
2,558,392 - +0.2
2,558,511 + +0.3
2,558,519 - +0.6
2,558,762 + SGL_RS19255 0.89 +0.1
2,558,782 + -0.4
2,560,130 - +1.7

Or see this region's nucleotide sequence