Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12910

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12905 and SGL_RS12910 are separated by 138 nucleotidesSGL_RS12910 and SGL_RS12915 are separated by 113 nucleotides SGL_RS12905: SGL_RS12905 - PAS domain-containing sensor histidine kinase, at 2,370,818 to 2,372,110 _RS12905 SGL_RS12910: SGL_RS12910 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,372,249 to 2,373,229 _RS12910 SGL_RS12915: SGL_RS12915 - circularly permuted type 2 ATP-grasp protein, at 2,373,343 to 2,374,788 _RS12915 Position (kb) 2372 2373 2374Strain fitness (log2 ratio) -3 -2 -1 0 1at 2371.278 kb on - strand, within SGL_RS12905at 2371.420 kb on - strand, within SGL_RS12905at 2371.524 kb on - strand, within SGL_RS12905at 2371.708 kb on - strand, within SGL_RS12905at 2371.709 kb on - strand, within SGL_RS12905at 2371.872 kb on + strand, within SGL_RS12905at 2372.366 kb on + strand, within SGL_RS12910at 2373.390 kb on + strandat 2373.426 kb on + strandat 2373.436 kb on + strandat 2373.534 kb on - strand, within SGL_RS12915at 2373.559 kb on + strand, within SGL_RS12915at 2373.648 kb on - strand, within SGL_RS12915at 2373.695 kb on + strand, within SGL_RS12915at 2373.855 kb on + strand, within SGL_RS12915at 2373.858 kb on - strand, within SGL_RS12915at 2373.858 kb on - strand, within SGL_RS12915at 2373.883 kb on + strand, within SGL_RS12915at 2373.932 kb on - strand, within SGL_RS12915at 2373.976 kb on + strand, within SGL_RS12915at 2374.116 kb on - strand, within SGL_RS12915at 2374.126 kb on - strand, within SGL_RS12915

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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2,371,278 - SGL_RS12905 0.36 +0.5
2,371,420 - SGL_RS12905 0.47 -0.0
2,371,524 - SGL_RS12905 0.55 +0.8
2,371,708 - SGL_RS12905 0.69 +0.3
2,371,709 - SGL_RS12905 0.69 +0.0
2,371,872 + SGL_RS12905 0.82 +0.1
2,372,366 + SGL_RS12910 0.12 -3.0
2,373,390 + -0.8
2,373,426 + -0.7
2,373,436 + +0.1
2,373,534 - SGL_RS12915 0.13 -0.8
2,373,559 + SGL_RS12915 0.15 +0.1
2,373,648 - SGL_RS12915 0.21 -0.3
2,373,695 + SGL_RS12915 0.24 +0.3
2,373,855 + SGL_RS12915 0.35 -0.1
2,373,858 - SGL_RS12915 0.36 +0.0
2,373,858 - SGL_RS12915 0.36 +0.3
2,373,883 + SGL_RS12915 0.37 +0.2
2,373,932 - SGL_RS12915 0.41 -0.3
2,373,976 + SGL_RS12915 0.44 +0.6
2,374,116 - SGL_RS12915 0.53 -0.8
2,374,126 - SGL_RS12915 0.54 +0.0

Or see this region's nucleotide sequence