Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11290

Experiment: growth in full media bubbled with ambient air

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11280 and SGL_RS11285 are separated by 102 nucleotidesSGL_RS11285 and SGL_RS11290 are separated by 101 nucleotidesSGL_RS11290 and SGL_RS11295 are separated by 245 nucleotidesSGL_RS11295 and SGL_RS11300 are separated by 202 nucleotides SGL_RS11280: SGL_RS11280 - serine/threonine-protein kinase, at 1,991,550 to 1,993,274 _RS11280 SGL_RS11285: SGL_RS11285 - response regulator transcription factor, at 1,993,377 to 1,994,045 _RS11285 SGL_RS11290: SGL_RS11290 - phosphoenolpyruvate carboxylase, at 1,994,147 to 1,997,251 _RS11290 SGL_RS11295: SGL_RS11295 - hypothetical protein, at 1,997,497 to 1,997,790 _RS11295 SGL_RS11300: SGL_RS11300 - NfeD family protein, at 1,997,993 to 1,998,451 _RS11300 Position (kb) 1994 1995 1996 1997 1998Strain fitness (log2 ratio) -1 0 1at 1993.274 kb on + strandat 1993.365 kb on + strandat 1993.402 kb on + strandat 1993.464 kb on + strand, within SGL_RS11285at 1994.046 kb on + strandat 1994.105 kb on - strandat 1994.115 kb on - strandat 1997.330 kb on - strandat 1997.906 kb on + strandat 1997.907 kb on - strandat 1998.029 kb on + strandat 1998.032 kb on - strandat 1998.039 kb on - strand, within SGL_RS11300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
remove
1,993,274 + -0.3
1,993,365 + +0.1
1,993,402 + +1.2
1,993,464 + SGL_RS11285 0.13 +1.3
1,994,046 + +0.3
1,994,105 - +1.2
1,994,115 - +0.6
1,997,330 - -0.4
1,997,906 + -0.1
1,997,907 - +0.3
1,998,029 + -0.8
1,998,032 - -0.5
1,998,039 - SGL_RS11300 0.10 +1.1

Or see this region's nucleotide sequence