Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10125

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10115 and SGL_RS10125 are separated by 305 nucleotidesSGL_RS10125 and SGL_RS10130 are separated by 214 nucleotides SGL_RS10115: SGL_RS10115 - serine O-acetyltransferase, at 1,743,443 to 1,744,192 _RS10115 SGL_RS10125: SGL_RS10125 - glucose-6-phosphate isomerase, at 1,744,498 to 1,746,093 _RS10125 SGL_RS10130: SGL_RS10130 - fatty acid desaturase, at 1,746,308 to 1,747,363 _RS10130 Position (kb) 1744 1745 1746 1747Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1744.223 kb on - strandat 1744.239 kb on - strandat 1744.453 kb on + strandat 1744.955 kb on - strand, within SGL_RS10125at 1745.514 kb on + strand, within SGL_RS10125at 1746.300 kb on - strandat 1746.396 kb on + strandat 1746.452 kb on - strand, within SGL_RS10130at 1746.462 kb on + strand, within SGL_RS10130at 1746.506 kb on + strand, within SGL_RS10130at 1746.548 kb on + strand, within SGL_RS10130at 1746.581 kb on - strand, within SGL_RS10130at 1746.652 kb on + strand, within SGL_RS10130at 1746.652 kb on + strand, within SGL_RS10130at 1746.806 kb on + strand, within SGL_RS10130at 1746.840 kb on + strand, within SGL_RS10130at 1746.840 kb on + strand, within SGL_RS10130at 1746.853 kb on - strand, within SGL_RS10130at 1746.931 kb on + strand, within SGL_RS10130at 1746.961 kb on + strand, within SGL_RS10130at 1746.962 kb on - strand, within SGL_RS10130at 1747.031 kb on + strand, within SGL_RS10130

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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1,744,223 - +1.4
1,744,239 - -0.1
1,744,453 + -2.3
1,744,955 - SGL_RS10125 0.29 -1.3
1,745,514 + SGL_RS10125 0.64 +0.7
1,746,300 - -4.4
1,746,396 + -3.7
1,746,452 - SGL_RS10130 0.14 -3.6
1,746,462 + SGL_RS10130 0.15 -0.9
1,746,506 + SGL_RS10130 0.19 -3.5
1,746,548 + SGL_RS10130 0.23 -1.1
1,746,581 - SGL_RS10130 0.26 -2.5
1,746,652 + SGL_RS10130 0.33 -4.1
1,746,652 + SGL_RS10130 0.33 -2.7
1,746,806 + SGL_RS10130 0.47 -2.0
1,746,840 + SGL_RS10130 0.50 -4.0
1,746,840 + SGL_RS10130 0.50 -4.9
1,746,853 - SGL_RS10130 0.52 -3.1
1,746,931 + SGL_RS10130 0.59 -3.5
1,746,961 + SGL_RS10130 0.62 -3.0
1,746,962 - SGL_RS10130 0.62 -4.3
1,747,031 + SGL_RS10130 0.68 -3.7

Or see this region's nucleotide sequence