Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10110

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10105 and SGL_RS10110 are separated by 58 nucleotidesSGL_RS10110 and SGL_RS10115 are separated by 73 nucleotides SGL_RS10105: SGL_RS10105 - bifunctional pantoate--beta-alanine ligase/(d)CMP kinase, at 1,740,834 to 1,742,375 _RS10105 SGL_RS10110: SGL_RS10110 - carbonic anhydrase, at 1,742,434 to 1,743,369 _RS10110 SGL_RS10115: SGL_RS10115 - serine O-acetyltransferase, at 1,743,443 to 1,744,192 _RS10115 Position (kb) 1742 1743 1744Strain fitness (log2 ratio) -3 -2 -1 0 1at 1741.758 kb on + strand, within SGL_RS10105at 1742.022 kb on - strand, within SGL_RS10105at 1742.383 kb on + strandat 1742.409 kb on + strandat 1742.417 kb on - strandat 1742.428 kb on - strandat 1742.436 kb on - strandat 1742.476 kb on + strandat 1742.476 kb on + strandat 1742.476 kb on + strandat 1742.476 kb on + strandat 1742.478 kb on + strandat 1742.484 kb on - strandat 1742.484 kb on - strandat 1742.484 kb on - strandat 1742.505 kb on - strandat 1744.223 kb on - strandat 1744.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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1,741,758 + SGL_RS10105 0.60 -0.9
1,742,022 - SGL_RS10105 0.77 -0.3
1,742,383 + -1.9
1,742,409 + -1.5
1,742,417 - +0.5
1,742,428 - -0.8
1,742,436 - -0.2
1,742,476 + -3.4
1,742,476 + -2.1
1,742,476 + -3.6
1,742,476 + -3.5
1,742,478 + -2.6
1,742,484 - -0.1
1,742,484 - -0.4
1,742,484 - -0.1
1,742,505 - -0.2
1,744,223 - +1.4
1,744,239 - -0.1

Or see this region's nucleotide sequence