Experiment: growth in full media bubbled with ambient air
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08040 and SGL_RS08045 are separated by 215 nucleotides SGL_RS08045 and SGL_RS08055 are separated by 293 nucleotides
SGL_RS08040: SGL_RS08040 - transcriptional repressor LexA, at 1,318,719 to 1,319,330
_RS08040
SGL_RS08045: SGL_RS08045 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 1,319,546 to 1,320,541
_RS08045
SGL_RS08055: SGL_RS08055 - two-component system response regulator, at 1,320,835 to 1,321,839
_RS08055
Position (kb)
1319
1320
1321 Strain fitness (log2 ratio)
-2
-1
0
1 at 1318.628 kb on + strand at 1318.837 kb on - strand, within SGL_RS08040 at 1319.135 kb on - strand, within SGL_RS08040 at 1319.337 kb on - strand at 1319.751 kb on + strand, within SGL_RS08045 at 1319.765 kb on - strand, within SGL_RS08045 at 1319.812 kb on - strand, within SGL_RS08045 at 1319.918 kb on + strand, within SGL_RS08045 at 1319.990 kb on + strand, within SGL_RS08045 at 1319.997 kb on + strand, within SGL_RS08045 at 1320.009 kb on + strand, within SGL_RS08045 at 1320.019 kb on - strand, within SGL_RS08045 at 1320.066 kb on + strand, within SGL_RS08045 at 1320.074 kb on - strand, within SGL_RS08045 at 1320.145 kb on - strand, within SGL_RS08045 at 1320.173 kb on - strand, within SGL_RS08045 at 1320.180 kb on - strand, within SGL_RS08045 at 1320.287 kb on - strand, within SGL_RS08045 at 1320.441 kb on - strand, within SGL_RS08045 at 1320.595 kb on - strand at 1320.762 kb on + strand at 1320.830 kb on - strand at 1320.830 kb on - strand at 1320.830 kb on - strand at 1320.830 kb on - strand at 1320.997 kb on + strand, within SGL_RS08055 at 1321.068 kb on + strand, within SGL_RS08055 at 1321.068 kb on + strand, within SGL_RS08055 at 1321.085 kb on - strand, within SGL_RS08055 at 1321.135 kb on - strand, within SGL_RS08055 at 1321.135 kb on - strand, within SGL_RS08055 at 1321.197 kb on - strand, within SGL_RS08055 at 1321.240 kb on + strand, within SGL_RS08055 at 1321.293 kb on - strand, within SGL_RS08055 at 1321.302 kb on + strand, within SGL_RS08055 at 1321.360 kb on - strand, within SGL_RS08055 at 1321.365 kb on - strand, within SGL_RS08055 at 1321.378 kb on + strand, within SGL_RS08055 at 1321.536 kb on + strand, within SGL_RS08055
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air remove 1,318,628 + +0.6 1,318,837 - SGL_RS08040 0.19 -1.9 1,319,135 - SGL_RS08040 0.68 -0.3 1,319,337 - -1.3 1,319,751 + SGL_RS08045 0.21 +0.0 1,319,765 - SGL_RS08045 0.22 +0.9 1,319,812 - SGL_RS08045 0.27 -0.0 1,319,918 + SGL_RS08045 0.37 -0.3 1,319,990 + SGL_RS08045 0.45 -0.8 1,319,997 + SGL_RS08045 0.45 -0.1 1,320,009 + SGL_RS08045 0.46 -0.6 1,320,019 - SGL_RS08045 0.47 -0.7 1,320,066 + SGL_RS08045 0.52 +1.2 1,320,074 - SGL_RS08045 0.53 -1.1 1,320,145 - SGL_RS08045 0.60 -0.6 1,320,173 - SGL_RS08045 0.63 -0.8 1,320,180 - SGL_RS08045 0.64 -0.2 1,320,287 - SGL_RS08045 0.74 -0.3 1,320,441 - SGL_RS08045 0.90 -1.5 1,320,595 - +0.0 1,320,762 + -0.9 1,320,830 - +0.5 1,320,830 - -0.2 1,320,830 - -0.1 1,320,830 - -0.1 1,320,997 + SGL_RS08055 0.16 +0.1 1,321,068 + SGL_RS08055 0.23 -0.6 1,321,068 + SGL_RS08055 0.23 -0.8 1,321,085 - SGL_RS08055 0.25 -0.1 1,321,135 - SGL_RS08055 0.30 -0.2 1,321,135 - SGL_RS08055 0.30 -0.5 1,321,197 - SGL_RS08055 0.36 +0.4 1,321,240 + SGL_RS08055 0.40 -0.6 1,321,293 - SGL_RS08055 0.46 +0.1 1,321,302 + SGL_RS08055 0.46 +0.2 1,321,360 - SGL_RS08055 0.52 -0.0 1,321,365 - SGL_RS08055 0.53 -0.1 1,321,378 + SGL_RS08055 0.54 -1.9 1,321,536 + SGL_RS08055 0.70 +0.1
Or see this region's nucleotide sequence