Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08045

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08040 and SGL_RS08045 are separated by 215 nucleotidesSGL_RS08045 and SGL_RS08055 are separated by 293 nucleotides SGL_RS08040: SGL_RS08040 - transcriptional repressor LexA, at 1,318,719 to 1,319,330 _RS08040 SGL_RS08045: SGL_RS08045 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 1,319,546 to 1,320,541 _RS08045 SGL_RS08055: SGL_RS08055 - two-component system response regulator, at 1,320,835 to 1,321,839 _RS08055 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -2 -1 0 1at 1318.628 kb on + strandat 1318.837 kb on - strand, within SGL_RS08040at 1319.135 kb on - strand, within SGL_RS08040at 1319.337 kb on - strandat 1319.751 kb on + strand, within SGL_RS08045at 1319.765 kb on - strand, within SGL_RS08045at 1319.812 kb on - strand, within SGL_RS08045at 1319.918 kb on + strand, within SGL_RS08045at 1319.990 kb on + strand, within SGL_RS08045at 1319.997 kb on + strand, within SGL_RS08045at 1320.009 kb on + strand, within SGL_RS08045at 1320.019 kb on - strand, within SGL_RS08045at 1320.066 kb on + strand, within SGL_RS08045at 1320.074 kb on - strand, within SGL_RS08045at 1320.145 kb on - strand, within SGL_RS08045at 1320.173 kb on - strand, within SGL_RS08045at 1320.180 kb on - strand, within SGL_RS08045at 1320.287 kb on - strand, within SGL_RS08045at 1320.441 kb on - strand, within SGL_RS08045at 1320.595 kb on - strandat 1320.762 kb on + strandat 1320.830 kb on - strandat 1320.830 kb on - strandat 1320.830 kb on - strandat 1320.830 kb on - strandat 1320.997 kb on + strand, within SGL_RS08055at 1321.068 kb on + strand, within SGL_RS08055at 1321.068 kb on + strand, within SGL_RS08055at 1321.085 kb on - strand, within SGL_RS08055at 1321.135 kb on - strand, within SGL_RS08055at 1321.135 kb on - strand, within SGL_RS08055at 1321.197 kb on - strand, within SGL_RS08055at 1321.240 kb on + strand, within SGL_RS08055at 1321.293 kb on - strand, within SGL_RS08055at 1321.302 kb on + strand, within SGL_RS08055at 1321.360 kb on - strand, within SGL_RS08055at 1321.365 kb on - strand, within SGL_RS08055at 1321.378 kb on + strand, within SGL_RS08055at 1321.536 kb on + strand, within SGL_RS08055

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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1,318,628 + +0.6
1,318,837 - SGL_RS08040 0.19 -1.9
1,319,135 - SGL_RS08040 0.68 -0.3
1,319,337 - -1.3
1,319,751 + SGL_RS08045 0.21 +0.0
1,319,765 - SGL_RS08045 0.22 +0.9
1,319,812 - SGL_RS08045 0.27 -0.0
1,319,918 + SGL_RS08045 0.37 -0.3
1,319,990 + SGL_RS08045 0.45 -0.8
1,319,997 + SGL_RS08045 0.45 -0.1
1,320,009 + SGL_RS08045 0.46 -0.6
1,320,019 - SGL_RS08045 0.47 -0.7
1,320,066 + SGL_RS08045 0.52 +1.2
1,320,074 - SGL_RS08045 0.53 -1.1
1,320,145 - SGL_RS08045 0.60 -0.6
1,320,173 - SGL_RS08045 0.63 -0.8
1,320,180 - SGL_RS08045 0.64 -0.2
1,320,287 - SGL_RS08045 0.74 -0.3
1,320,441 - SGL_RS08045 0.90 -1.5
1,320,595 - +0.0
1,320,762 + -0.9
1,320,830 - +0.5
1,320,830 - -0.2
1,320,830 - -0.1
1,320,830 - -0.1
1,320,997 + SGL_RS08055 0.16 +0.1
1,321,068 + SGL_RS08055 0.23 -0.6
1,321,068 + SGL_RS08055 0.23 -0.8
1,321,085 - SGL_RS08055 0.25 -0.1
1,321,135 - SGL_RS08055 0.30 -0.2
1,321,135 - SGL_RS08055 0.30 -0.5
1,321,197 - SGL_RS08055 0.36 +0.4
1,321,240 + SGL_RS08055 0.40 -0.6
1,321,293 - SGL_RS08055 0.46 +0.1
1,321,302 + SGL_RS08055 0.46 +0.2
1,321,360 - SGL_RS08055 0.52 -0.0
1,321,365 - SGL_RS08055 0.53 -0.1
1,321,378 + SGL_RS08055 0.54 -1.9
1,321,536 + SGL_RS08055 0.70 +0.1

Or see this region's nucleotide sequence