Experiment: growth in full media bubbled with ambient air
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07790 and SGL_RS07795 are separated by 128 nucleotides SGL_RS07795 and SGL_RS19450 are separated by 79 nucleotides SGL_RS19450 and SGL_RS07800 overlap by 18 nucleotides SGL_RS07800 and SGL_RS07805 are separated by 79 nucleotides SGL_RS07805 and SGL_RS07810 overlap by 4 nucleotides
SGL_RS07790: SGL_RS07790 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 1,264,328 to 1,267,564
_RS07790
SGL_RS07795: SGL_RS07795 - chlororespiratory reduction protein 7, at 1,267,693 to 1,267,950
_RS07795
SGL_RS19450: SGL_RS19450 - hypothetical protein, at 1,268,030 to 1,268,206
_RS19450
SGL_RS07800: SGL_RS07800 - photosystem II protein Y, at 1,268,189 to 1,268,308
_RS07800
SGL_RS07805: SGL_RS07805 - methylenetetrahydrofolate reductase, at 1,268,388 to 1,269,410
_RS07805
SGL_RS07810: SGL_RS07810 - glycosyltransferase family 39 protein, at 1,269,407 to 1,270,960
_RS07810
Position (kb) 1268
1269
1270 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1268.115 kb on + strand, within SGL_RS19450 at 1268.279 kb on - strand, within SGL_RS07800 at 1268.287 kb on + strand, within SGL_RS07800 at 1268.352 kb on + strand at 1268.352 kb on + strand at 1268.360 kb on - strand at 1268.435 kb on + strand at 1269.383 kb on + strand at 1269.457 kb on + strand at 1269.548 kb on - strand at 1269.550 kb on + strand at 1269.619 kb on - strand, within SGL_RS07810 at 1269.640 kb on - strand, within SGL_RS07810 at 1269.705 kb on + strand, within SGL_RS07810 at 1269.738 kb on + strand, within SGL_RS07810 at 1269.871 kb on - strand, within SGL_RS07810 at 1270.089 kb on - strand, within SGL_RS07810 at 1270.121 kb on - strand, within SGL_RS07810 at 1270.121 kb on - strand, within SGL_RS07810 at 1270.165 kb on - strand, within SGL_RS07810 at 1270.165 kb on - strand, within SGL_RS07810 at 1270.317 kb on - strand, within SGL_RS07810 at 1270.330 kb on - strand, within SGL_RS07810 at 1270.397 kb on - strand, within SGL_RS07810
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air remove 1,268,115 + SGL_RS19450 0.48 -0.2 1,268,279 - SGL_RS07800 0.75 +1.2 1,268,287 + SGL_RS07800 0.82 +2.2 1,268,352 + +1.1 1,268,352 + +1.6 1,268,360 - +0.8 1,268,435 + +0.6 1,269,383 + +0.8 1,269,457 + -2.7 1,269,548 - -2.2 1,269,550 + -3.2 1,269,619 - SGL_RS07810 0.14 -4.2 1,269,640 - SGL_RS07810 0.15 -3.5 1,269,705 + SGL_RS07810 0.19 -2.3 1,269,738 + SGL_RS07810 0.21 -2.1 1,269,871 - SGL_RS07810 0.30 -3.0 1,270,089 - SGL_RS07810 0.44 -2.0 1,270,121 - SGL_RS07810 0.46 -1.7 1,270,121 - SGL_RS07810 0.46 -3.0 1,270,165 - SGL_RS07810 0.49 -2.9 1,270,165 - SGL_RS07810 0.49 -2.5 1,270,317 - SGL_RS07810 0.59 -2.0 1,270,330 - SGL_RS07810 0.59 -3.0 1,270,397 - SGL_RS07810 0.64 -1.4
Or see this region's nucleotide sequence