Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07035

Experiment: growth in full media bubbled with ambient air

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07030 and SGL_RS07035 are separated by 268 nucleotidesSGL_RS07035 and SGL_RS07040 are separated by 187 nucleotidesSGL_RS07040 and SGL_RS07045 are separated by 382 nucleotides SGL_RS07030: SGL_RS07030 - ABC transporter ATP-binding protein, at 1,100,410 to 1,102,014 _RS07030 SGL_RS07035: SGL_RS07035 - pyruvate kinase, at 1,102,283 to 1,104,058 _RS07035 SGL_RS07040: SGL_RS07040 - DUF1824 family protein, at 1,104,246 to 1,104,647 _RS07040 SGL_RS07045: SGL_RS07045 - TIGR02652 family protein, at 1,105,030 to 1,105,545 _RS07045 Position (kb) 1102 1103 1104 1105Strain fitness (log2 ratio) -1 0 1at 1102.258 kb on + strandat 1102.260 kb on + strandat 1104.100 kb on - strandat 1104.179 kb on + strandat 1104.194 kb on - strandat 1104.278 kb on + strandat 1104.298 kb on + strand, within SGL_RS07040at 1104.338 kb on - strand, within SGL_RS07040at 1104.398 kb on + strand, within SGL_RS07040at 1104.406 kb on - strand, within SGL_RS07040at 1104.474 kb on - strand, within SGL_RS07040at 1104.591 kb on + strand, within SGL_RS07040at 1104.860 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
remove
1,102,258 + -0.5
1,102,260 + -0.8
1,104,100 - +0.7
1,104,179 + -0.6
1,104,194 - -0.1
1,104,278 + +0.1
1,104,298 + SGL_RS07040 0.13 +0.0
1,104,338 - SGL_RS07040 0.23 -0.1
1,104,398 + SGL_RS07040 0.38 -0.4
1,104,406 - SGL_RS07040 0.40 +0.2
1,104,474 - SGL_RS07040 0.57 -0.6
1,104,591 + SGL_RS07040 0.86 +0.1
1,104,860 + -0.5

Or see this region's nucleotide sequence