Experiment: growth in full media bubbled with ambient air
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06340 and SGL_RS06345 overlap by 4 nucleotides SGL_RS06345 and SGL_RS06350 are separated by 377 nucleotides SGL_RS06350 and SGL_RS06355 are separated by 158 nucleotides
SGL_RS06340: SGL_RS06340 - response regulator transcription factor, at 953,752 to 954,456
_RS06340
SGL_RS06345: SGL_RS06345 - alpha-ketoacid dehydrogenase subunit beta, at 954,453 to 955,427
_RS06345
SGL_RS06350: SGL_RS06350 - BMC domain-containing protein, at 955,805 to 956,116
_RS06350
SGL_RS06355: SGL_RS06355 - carbon dioxide-concentrating mechanism protein CcmK, at 956,275 to 956,613
_RS06355
Position (kb) 954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 953.536 kb on + strand at 953.687 kb on - strand at 953.809 kb on + strand at 953.809 kb on + strand at 953.831 kb on - strand, within SGL_RS06340 at 953.831 kb on - strand, within SGL_RS06340 at 953.964 kb on - strand, within SGL_RS06340 at 954.012 kb on - strand, within SGL_RS06340 at 954.205 kb on + strand, within SGL_RS06340 at 954.217 kb on + strand, within SGL_RS06340 at 954.225 kb on - strand, within SGL_RS06340 at 954.401 kb on - strand at 955.749 kb on - strand at 955.841 kb on - strand, within SGL_RS06350 at 956.014 kb on - strand, within SGL_RS06350 at 956.146 kb on + strand at 956.161 kb on - strand at 956.266 kb on - strand at 956.349 kb on + strand, within SGL_RS06355 at 956.349 kb on + strand, within SGL_RS06355 at 956.408 kb on + strand, within SGL_RS06355
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air remove 953,536 + +0.0 953,687 - +0.0 953,809 + -3.1 953,809 + -1.3 953,831 - SGL_RS06340 0.11 -2.9 953,831 - SGL_RS06340 0.11 -2.9 953,964 - SGL_RS06340 0.30 -1.6 954,012 - SGL_RS06340 0.37 -2.5 954,205 + SGL_RS06340 0.64 -3.3 954,217 + SGL_RS06340 0.66 -3.7 954,225 - SGL_RS06340 0.67 -4.5 954,401 - -3.7 955,749 - +1.0 955,841 - SGL_RS06350 0.12 +1.5 956,014 - SGL_RS06350 0.67 +1.4 956,146 + +1.2 956,161 - +0.3 956,266 - +2.7 956,349 + SGL_RS06355 0.22 +1.3 956,349 + SGL_RS06355 0.22 +0.7 956,408 + SGL_RS06355 0.39 +0.3
Or see this region's nucleotide sequence