Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02445

Experiment: growth in full media bubbled with ambient air

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02440 and SGL_RS02445 are separated by 89 nucleotidesSGL_RS02445 and SGL_RS02450 are separated by 80 nucleotidesSGL_RS02450 and SGL_RS02455 overlap by 20 nucleotides SGL_RS02440: SGL_RS02440 - anthranilate synthase component I, at 127,186 to 128,712 _RS02440 SGL_RS02445: SGL_RS02445 - polyprenyl synthetase family protein, at 128,802 to 129,710 _RS02445 SGL_RS02450: SGL_RS02450 - hypothetical protein, at 129,791 to 130,186 _RS02450 SGL_RS02455: SGL_RS02455 - CPBP family intramembrane metalloprotease, at 130,167 to 131,039 _RS02455 Position (kb) 128 129 130Strain fitness (log2 ratio) -1 0 1at 128.312 kb on - strand, within SGL_RS02440at 128.783 kb on - strandat 129.609 kb on - strand, within SGL_RS02445at 129.712 kb on - strandat 129.967 kb on - strand, within SGL_RS02450at 130.005 kb on - strand, within SGL_RS02450at 130.076 kb on + strand, within SGL_RS02450at 130.076 kb on + strand, within SGL_RS02450at 130.084 kb on - strand, within SGL_RS02450at 130.130 kb on - strand, within SGL_RS02450at 130.136 kb on - strand, within SGL_RS02450

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
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128,312 - SGL_RS02440 0.74 -0.9
128,783 - -1.6
129,609 - SGL_RS02445 0.89 +0.7
129,712 - -0.2
129,967 - SGL_RS02450 0.44 -0.3
130,005 - SGL_RS02450 0.54 +0.1
130,076 + SGL_RS02450 0.72 +0.0
130,076 + SGL_RS02450 0.72 -0.2
130,084 - SGL_RS02450 0.74 -0.3
130,130 - SGL_RS02450 0.86 -0.6
130,136 - SGL_RS02450 0.87 -0.1

Or see this region's nucleotide sequence