Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02325

Experiment: growth in full media bubbled with ambient air

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS02320 and SGL_RS02325 are separated by 40 nucleotidesSGL_RS02325 and SGL_RS18640 are separated by 440 nucleotides SGL_RS02320: SGL_RS02320 - hypothetical protein, at 102,930 to 105,110 _RS02320 SGL_RS02325: SGL_RS02325 - McrB family protein, at 105,151 to 106,464 _RS02325 SGL_RS18640: SGL_RS18640 - transposase, at 106,905 to 107,208 _RS18640 Position (kb) 105 106 107Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 104.211 kb on + strand, within SGL_RS02320at 104.316 kb on - strand, within SGL_RS02320at 106.092 kb on - strand, within SGL_RS02325at 106.496 kb on + strandat 107.050 kb on + strand, within SGL_RS18640at 107.112 kb on - strand, within SGL_RS18640at 107.275 kb on - strandat 107.328 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air
remove
104,211 + SGL_RS02320 0.59 -3.9
104,316 - SGL_RS02320 0.64 -1.5
106,092 - SGL_RS02325 0.72 -3.6
106,496 + -1.4
107,050 + SGL_RS18640 0.48 -0.0
107,112 - SGL_RS18640 0.68 -0.1
107,275 - +0.2
107,328 + -0.8

Or see this region's nucleotide sequence