Experiment: growth in full media bubbled with ambient air
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02090 and SGL_RS02095 are separated by 11 nucleotides SGL_RS02095 and SGL_RS02100 are separated by 5 nucleotides SGL_RS02100 and SGL_RS02105 are separated by 115 nucleotides
SGL_RS02090: SGL_RS02090 - hydrogenase formation protein HypD, at 54,533 to 55,657
_RS02090
SGL_RS02095: SGL_RS02095 - dTDP-4-dehydrorhamnose reductase, at 55,669 to 56,550
_RS02095
SGL_RS02100: SGL_RS02100 - peptide-methionine (S)-S-oxide reductase MsrA, at 56,556 to 57,224
_RS02100
SGL_RS02105: SGL_RS02105 - glycogen synthase GlgA, at 57,340 to 58,815
_RS02105
Position (kb) 55
56
57 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 54.717 kb on + strand, within SGL_RS02090 at 54.754 kb on + strand, within SGL_RS02090 at 54.762 kb on + strand, within SGL_RS02090 at 55.211 kb on - strand, within SGL_RS02090 at 55.289 kb on + strand, within SGL_RS02090 at 55.291 kb on - strand, within SGL_RS02090 at 55.330 kb on + strand, within SGL_RS02090 at 55.340 kb on + strand, within SGL_RS02090 at 55.365 kb on + strand, within SGL_RS02090 at 55.582 kb on + strand at 55.734 kb on + strand at 55.842 kb on + strand, within SGL_RS02095 at 56.098 kb on - strand, within SGL_RS02095 at 56.326 kb on + strand, within SGL_RS02095 at 56.353 kb on + strand, within SGL_RS02095 at 56.353 kb on + strand, within SGL_RS02095 at 56.356 kb on - strand, within SGL_RS02095 at 56.447 kb on - strand, within SGL_RS02095 at 56.753 kb on + strand, within SGL_RS02100 at 56.813 kb on - strand, within SGL_RS02100 at 56.848 kb on + strand, within SGL_RS02100 at 56.848 kb on + strand, within SGL_RS02100 at 56.851 kb on - strand, within SGL_RS02100 at 56.857 kb on - strand, within SGL_RS02100 at 57.022 kb on - strand, within SGL_RS02100 at 57.177 kb on - strand at 57.257 kb on + strand at 57.299 kb on + strand at 57.332 kb on - strand at 57.345 kb on - strand at 57.352 kb on - strand at 57.408 kb on - strand at 57.457 kb on - strand at 57.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air remove 54,717 + SGL_RS02090 0.16 +0.3 54,754 + SGL_RS02090 0.20 -0.4 54,762 + SGL_RS02090 0.20 +0.4 55,211 - SGL_RS02090 0.60 +0.3 55,289 + SGL_RS02090 0.67 +0.8 55,291 - SGL_RS02090 0.67 +0.4 55,330 + SGL_RS02090 0.71 +0.2 55,340 + SGL_RS02090 0.72 +0.5 55,365 + SGL_RS02090 0.74 +0.4 55,582 + -0.0 55,734 + -2.3 55,842 + SGL_RS02095 0.20 -4.1 56,098 - SGL_RS02095 0.49 -4.0 56,326 + SGL_RS02095 0.74 -3.7 56,353 + SGL_RS02095 0.78 -2.8 56,353 + SGL_RS02095 0.78 -2.9 56,356 - SGL_RS02095 0.78 -2.3 56,447 - SGL_RS02095 0.88 -1.3 56,753 + SGL_RS02100 0.29 +0.6 56,813 - SGL_RS02100 0.38 +0.1 56,848 + SGL_RS02100 0.44 +0.1 56,848 + SGL_RS02100 0.44 +0.4 56,851 - SGL_RS02100 0.44 -0.0 56,857 - SGL_RS02100 0.45 -0.2 57,022 - SGL_RS02100 0.70 +0.1 57,177 - +0.1 57,257 + +0.7 57,299 + +0.5 57,332 - -0.2 57,345 - +0.1 57,352 - -0.5 57,408 - +0.4 57,457 - -0.3 57,457 - +0.3
Or see this region's nucleotide sequence