Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08620

Experiment: growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with air enriched with 5% CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08610 and SGL_RS08615 are separated by 40 nucleotidesSGL_RS08615 and SGL_RS08620 are separated by 26 nucleotidesSGL_RS08620 and SGL_RS08625 are separated by 101 nucleotidesSGL_RS08625 and SGL_RS08630 are separated by 60 nucleotides SGL_RS08610: SGL_RS08610 - adenylate/guanylate cyclase domain-containing protein, at 1,435,645 to 1,436,658 _RS08610 SGL_RS08615: SGL_RS08615 - glutathione peroxidase, at 1,436,699 to 1,437,163 _RS08615 SGL_RS08620: SGL_RS08620 - thiolase family protein, at 1,437,190 to 1,438,602 _RS08620 SGL_RS08625: SGL_RS08625 - SDR family oxidoreductase, at 1,438,704 to 1,439,426 _RS08625 SGL_RS08630: SGL_RS08630 - PucC family protein, at 1,439,487 to 1,440,941 _RS08630 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -1 0 1at 1436.305 kb on + strand, within SGL_RS08610at 1436.384 kb on + strand, within SGL_RS08610at 1436.502 kb on - strand, within SGL_RS08610at 1436.550 kb on + strand, within SGL_RS08610at 1436.558 kb on - strandat 1436.601 kb on - strandat 1436.619 kb on - strandat 1436.629 kb on - strandat 1436.651 kb on + strandat 1436.732 kb on - strandat 1436.751 kb on - strand, within SGL_RS08615at 1436.818 kb on - strand, within SGL_RS08615at 1436.831 kb on + strand, within SGL_RS08615at 1436.831 kb on - strand, within SGL_RS08615at 1436.836 kb on + strand, within SGL_RS08615at 1436.868 kb on + strand, within SGL_RS08615at 1436.998 kb on - strand, within SGL_RS08615at 1437.197 kb on + strandat 1437.389 kb on + strand, within SGL_RS08620at 1437.448 kb on + strand, within SGL_RS08620at 1437.450 kb on + strand, within SGL_RS08620at 1437.551 kb on + strand, within SGL_RS08620at 1437.551 kb on + strand, within SGL_RS08620at 1437.584 kb on + strand, within SGL_RS08620at 1437.619 kb on + strand, within SGL_RS08620at 1437.659 kb on - strand, within SGL_RS08620at 1437.659 kb on - strand, within SGL_RS08620at 1437.696 kb on + strand, within SGL_RS08620at 1437.696 kb on + strand, within SGL_RS08620at 1437.706 kb on + strand, within SGL_RS08620at 1437.951 kb on - strand, within SGL_RS08620at 1437.956 kb on - strand, within SGL_RS08620at 1438.051 kb on + strand, within SGL_RS08620at 1438.077 kb on - strand, within SGL_RS08620at 1438.194 kb on - strand, within SGL_RS08620at 1438.332 kb on + strand, within SGL_RS08620at 1438.443 kb on + strand, within SGL_RS08620at 1438.496 kb on + strandat 1438.499 kb on - strandat 1438.506 kb on + strandat 1438.509 kb on - strandat 1438.594 kb on - strandat 1438.596 kb on + strandat 1438.596 kb on + strandat 1438.604 kb on - strandat 1438.637 kb on - strandat 1438.981 kb on + strand, within SGL_RS08625at 1439.120 kb on + strand, within SGL_RS08625at 1439.203 kb on + strand, within SGL_RS08625at 1439.207 kb on - strand, within SGL_RS08625at 1439.494 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with air enriched with 5% CO2
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1,436,305 + SGL_RS08610 0.65 -0.6
1,436,384 + SGL_RS08610 0.73 -0.9
1,436,502 - SGL_RS08610 0.85 -0.0
1,436,550 + SGL_RS08610 0.89 +0.5
1,436,558 - -0.5
1,436,601 - -0.3
1,436,619 - -0.2
1,436,629 - -0.1
1,436,651 + +0.7
1,436,732 - -0.9
1,436,751 - SGL_RS08615 0.11 +0.0
1,436,818 - SGL_RS08615 0.26 -0.2
1,436,831 + SGL_RS08615 0.28 +0.3
1,436,831 - SGL_RS08615 0.28 +0.3
1,436,836 + SGL_RS08615 0.29 +0.4
1,436,868 + SGL_RS08615 0.36 +0.6
1,436,998 - SGL_RS08615 0.64 -0.2
1,437,197 + +0.2
1,437,389 + SGL_RS08620 0.14 +0.2
1,437,448 + SGL_RS08620 0.18 +0.0
1,437,450 + SGL_RS08620 0.18 +0.4
1,437,551 + SGL_RS08620 0.26 -0.0
1,437,551 + SGL_RS08620 0.26 +1.2
1,437,584 + SGL_RS08620 0.28 +0.5
1,437,619 + SGL_RS08620 0.30 +0.5
1,437,659 - SGL_RS08620 0.33 +0.8
1,437,659 - SGL_RS08620 0.33 +0.1
1,437,696 + SGL_RS08620 0.36 +0.4
1,437,696 + SGL_RS08620 0.36 +0.2
1,437,706 + SGL_RS08620 0.37 -0.1
1,437,951 - SGL_RS08620 0.54 +0.6
1,437,956 - SGL_RS08620 0.54 -1.0
1,438,051 + SGL_RS08620 0.61 +0.3
1,438,077 - SGL_RS08620 0.63 -0.1
1,438,194 - SGL_RS08620 0.71 +0.4
1,438,332 + SGL_RS08620 0.81 -0.2
1,438,443 + SGL_RS08620 0.89 -0.1
1,438,496 + +0.2
1,438,499 - -1.1
1,438,506 + -0.4
1,438,509 - -0.1
1,438,594 - -0.2
1,438,596 + +0.1
1,438,596 + -0.1
1,438,604 - -0.1
1,438,637 - +0.4
1,438,981 + SGL_RS08625 0.38 +0.0
1,439,120 + SGL_RS08625 0.58 +0.6
1,439,203 + SGL_RS08625 0.69 +0.1
1,439,207 - SGL_RS08625 0.70 -0.3
1,439,494 + -0.8

Or see this region's nucleotide sequence