Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18285

Experiment: growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with ambient air

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS18280 and SGL_RS18285 are separated by 138 nucleotidesSGL_RS18285 and SGL_RS18290 are separated by 74 nucleotidesSGL_RS18290 and SGL_RS18295 are separated by 142 nucleotides SGL_RS18280: SGL_RS18280 - recombinase RecA, at 3,549,956 to 3,551,020 _RS18280 SGL_RS18285: SGL_RS18285 - ABC transporter permease, at 3,551,159 to 3,552,382 _RS18285 SGL_RS18290: SGL_RS18290 - transcriptional repressor, at 3,552,457 to 3,552,954 _RS18290 SGL_RS18295: SGL_RS18295 - creatininase family protein, at 3,553,097 to 3,553,918 _RS18295 Position (kb) 3551 3552 3553Strain fitness (log2 ratio) -1 0 1at 3551.098 kb on - strandat 3551.098 kb on - strandat 3551.200 kb on + strandat 3551.254 kb on - strandat 3551.294 kb on + strand, within SGL_RS18285at 3551.302 kb on - strand, within SGL_RS18285at 3551.302 kb on - strand, within SGL_RS18285at 3551.302 kb on - strand, within SGL_RS18285at 3551.302 kb on - strand, within SGL_RS18285at 3551.331 kb on + strand, within SGL_RS18285at 3551.423 kb on - strand, within SGL_RS18285at 3551.437 kb on + strand, within SGL_RS18285at 3551.478 kb on + strand, within SGL_RS18285at 3551.478 kb on + strand, within SGL_RS18285at 3551.604 kb on - strand, within SGL_RS18285at 3551.700 kb on + strand, within SGL_RS18285at 3551.738 kb on + strand, within SGL_RS18285at 3551.741 kb on - strand, within SGL_RS18285at 3551.907 kb on - strand, within SGL_RS18285at 3552.131 kb on + strand, within SGL_RS18285at 3552.167 kb on + strand, within SGL_RS18285at 3552.191 kb on - strand, within SGL_RS18285at 3552.366 kb on - strandat 3552.370 kb on + strandat 3552.370 kb on + strandat 3553.156 kb on + strandat 3553.351 kb on + strand, within SGL_RS18295at 3553.366 kb on - strand, within SGL_RS18295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in media lacking HCO3 buffered with 10 TES pH8 and bubbled with ambient air
remove
3,551,098 - +0.2
3,551,098 - -0.1
3,551,200 + -0.6
3,551,254 - -0.5
3,551,294 + SGL_RS18285 0.11 -0.1
3,551,302 - SGL_RS18285 0.12 -0.4
3,551,302 - SGL_RS18285 0.12 -0.9
3,551,302 - SGL_RS18285 0.12 +1.6
3,551,302 - SGL_RS18285 0.12 -0.6
3,551,331 + SGL_RS18285 0.14 +0.8
3,551,423 - SGL_RS18285 0.22 -1.0
3,551,437 + SGL_RS18285 0.23 -0.2
3,551,478 + SGL_RS18285 0.26 -0.9
3,551,478 + SGL_RS18285 0.26 -0.5
3,551,604 - SGL_RS18285 0.36 -0.7
3,551,700 + SGL_RS18285 0.44 -1.6
3,551,738 + SGL_RS18285 0.47 -0.2
3,551,741 - SGL_RS18285 0.48 -0.6
3,551,907 - SGL_RS18285 0.61 -0.4
3,552,131 + SGL_RS18285 0.79 -0.1
3,552,167 + SGL_RS18285 0.82 -0.5
3,552,191 - SGL_RS18285 0.84 -0.2
3,552,366 - -0.2
3,552,370 + -1.4
3,552,370 + -0.2
3,553,156 + -0.4
3,553,351 + SGL_RS18295 0.31 -0.9
3,553,366 - SGL_RS18295 0.33 +0.0

Or see this region's nucleotide sequence