Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19395

Experiment: Synechocystis_PCC6803_ML3a diversity barseq (outgrowth of original library)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01320 and SGL_RS19395 are separated by 362 nucleotidesSGL_RS19395 and SGL_RS18570 are separated by 10 nucleotidesSGL_RS18570 and SGL_RS01335 are separated by 84 nucleotides SGL_RS01320: SGL_RS01320 - HNH endonuclease, at 37,299 to 38,048 _RS01320 SGL_RS19395: SGL_RS19395 - hypothetical protein, at 38,411 to 38,557 _RS19395 SGL_RS18570: SGL_RS18570 - IS630 family transposase, at 38,568 to 39,415 _RS18570 SGL_RS01335: SGL_RS01335 - hypothetical protein, at 39,500 to 40,969 _RS01335 Position (kb) 38 39Strain fitness (log2 ratio) -1 0 1at 37.512 kb on + strand, within SGL_RS01320at 37.661 kb on - strand, within SGL_RS01320at 37.766 kb on - strand, within SGL_RS01320at 37.977 kb on - strandat 38.078 kb on + strandat 38.464 kb on + strand, within SGL_RS19395at 38.486 kb on + strand, within SGL_RS19395at 38.486 kb on + strand, within SGL_RS19395at 39.552 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Synechocystis_PCC6803_ML3a diversity barseq (outgrowth of original library)
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37,512 + SGL_RS01320 0.28 +0.1
37,661 - SGL_RS01320 0.48 +0.3
37,766 - SGL_RS01320 0.62 +0.3
37,977 - +0.7
38,078 + -0.6
38,464 + SGL_RS19395 0.36 -0.6
38,486 + SGL_RS19395 0.51 -0.8
38,486 + SGL_RS19395 0.51 -0.9
39,552 + +1.4

Or see this region's nucleotide sequence