Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18710

Experiment: Synechocystis_PCC6803_ML3a diversity barseq (outgrowth of original library)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05620 and SGL_RS18710 are separated by 263 nucleotidesSGL_RS18710 and SGL_RS05630 are separated by 243 nucleotides SGL_RS05620: SGL_RS05620 - sodium/glutamate symporter, at 809,450 to 810,658 _RS05620 SGL_RS18710: SGL_RS18710 - DUF3155 domain-containing protein, at 810,922 to 811,245 _RS18710 SGL_RS05630: SGL_RS05630 - two-component system sensor histidine kinase Hik2, at 811,489 to 812,793 _RS05630 Position (kb) 810 811 812Strain fitness (log2 ratio) -1 0 1at 810.320 kb on - strand, within SGL_RS05620at 810.339 kb on + strand, within SGL_RS05620at 810.415 kb on + strand, within SGL_RS05620at 810.416 kb on - strand, within SGL_RS05620at 810.563 kb on + strandat 810.622 kb on - strandat 810.702 kb on + strandat 810.929 kb on - strandat 810.962 kb on - strand, within SGL_RS18710at 811.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Synechocystis_PCC6803_ML3a diversity barseq (outgrowth of original library)
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810,320 - SGL_RS05620 0.72 +0.1
810,339 + SGL_RS05620 0.74 -0.2
810,415 + SGL_RS05620 0.80 -0.3
810,416 - SGL_RS05620 0.80 +0.0
810,563 + +0.2
810,622 - -0.4
810,702 + -0.3
810,929 - -0.2
810,962 - SGL_RS18710 0.12 -0.8
811,493 - -0.6

Or see this region's nucleotide sequence