Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17800

Experiment: growth in full media supplemented with 5 .M Cl2Co but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17795 and SGL_RS17800 are separated by 331 nucleotidesSGL_RS17800 and SGL_RS17805 are separated by 48 nucleotides SGL_RS17795: SGL_RS17795 - peptidase domain-containing ABC transporter, at 3,449,979 to 3,452,129 _RS17795 SGL_RS17800: SGL_RS17800 - phytol kinase, at 3,452,461 to 3,453,162 _RS17800 SGL_RS17805: SGL_RS17805 - M20 family metallopeptidase, at 3,453,211 to 3,454,425 _RS17805 Position (kb) 3452 3453 3454Strain fitness (log2 ratio) -1 0 1at 3451.957 kb on - strandat 3452.013 kb on - strandat 3452.233 kb on - strandat 3452.507 kb on - strandat 3452.627 kb on - strand, within SGL_RS17800at 3452.709 kb on + strand, within SGL_RS17800at 3452.743 kb on - strand, within SGL_RS17800at 3452.898 kb on - strand, within SGL_RS17800at 3453.013 kb on - strand, within SGL_RS17800at 3453.059 kb on + strand, within SGL_RS17800at 3453.062 kb on - strand, within SGL_RS17800at 3453.067 kb on - strand, within SGL_RS17800at 3453.106 kb on - strandat 3453.114 kb on + strandat 3453.114 kb on + strandat 3453.157 kb on + strandat 3453.165 kb on - strandat 3453.171 kb on - strandat 3453.221 kb on - strandat 3453.353 kb on - strand, within SGL_RS17805at 3453.372 kb on - strand, within SGL_RS17805at 3453.406 kb on - strand, within SGL_RS17805at 3453.406 kb on - strand, within SGL_RS17805at 3453.452 kb on + strand, within SGL_RS17805at 3453.525 kb on + strand, within SGL_RS17805at 3453.579 kb on - strand, within SGL_RS17805at 3453.655 kb on + strand, within SGL_RS17805at 3453.661 kb on + strand, within SGL_RS17805at 3453.669 kb on - strand, within SGL_RS17805at 3453.670 kb on - strand, within SGL_RS17805at 3453.717 kb on + strand, within SGL_RS17805at 3453.756 kb on - strand, within SGL_RS17805at 3453.817 kb on + strand, within SGL_RS17805at 3453.825 kb on - strand, within SGL_RS17805at 3453.908 kb on + strand, within SGL_RS17805at 3453.908 kb on + strand, within SGL_RS17805at 3453.908 kb on + strand, within SGL_RS17805at 3453.923 kb on + strand, within SGL_RS17805at 3453.923 kb on + strand, within SGL_RS17805at 3453.933 kb on + strand, within SGL_RS17805at 3453.951 kb on - strand, within SGL_RS17805at 3454.036 kb on - strand, within SGL_RS17805at 3454.036 kb on - strand, within SGL_RS17805at 3454.064 kb on + strand, within SGL_RS17805

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M Cl2Co but diluted to prevent light attenuation
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3,451,957 - -0.1
3,452,013 - +0.0
3,452,233 - +0.2
3,452,507 - +0.2
3,452,627 - SGL_RS17800 0.24 +0.3
3,452,709 + SGL_RS17800 0.35 -0.5
3,452,743 - SGL_RS17800 0.40 -0.4
3,452,898 - SGL_RS17800 0.62 -1.3
3,453,013 - SGL_RS17800 0.79 -0.3
3,453,059 + SGL_RS17800 0.85 -1.1
3,453,062 - SGL_RS17800 0.86 -0.6
3,453,067 - SGL_RS17800 0.86 -0.5
3,453,106 - -1.5
3,453,114 + -0.6
3,453,114 + -0.9
3,453,157 + -0.2
3,453,165 - +0.2
3,453,171 - +0.3
3,453,221 - -0.3
3,453,353 - SGL_RS17805 0.12 -0.0
3,453,372 - SGL_RS17805 0.13 +0.0
3,453,406 - SGL_RS17805 0.16 +0.4
3,453,406 - SGL_RS17805 0.16 -0.0
3,453,452 + SGL_RS17805 0.20 -0.2
3,453,525 + SGL_RS17805 0.26 -0.3
3,453,579 - SGL_RS17805 0.30 -0.3
3,453,655 + SGL_RS17805 0.37 +0.2
3,453,661 + SGL_RS17805 0.37 +0.2
3,453,669 - SGL_RS17805 0.38 -0.4
3,453,670 - SGL_RS17805 0.38 -0.7
3,453,717 + SGL_RS17805 0.42 +0.4
3,453,756 - SGL_RS17805 0.45 +0.0
3,453,817 + SGL_RS17805 0.50 +0.3
3,453,825 - SGL_RS17805 0.51 +0.5
3,453,908 + SGL_RS17805 0.57 +0.5
3,453,908 + SGL_RS17805 0.57 -1.0
3,453,908 + SGL_RS17805 0.57 +0.5
3,453,923 + SGL_RS17805 0.59 +0.8
3,453,923 + SGL_RS17805 0.59 +0.3
3,453,933 + SGL_RS17805 0.59 -0.4
3,453,951 - SGL_RS17805 0.61 -0.1
3,454,036 - SGL_RS17805 0.68 -0.0
3,454,036 - SGL_RS17805 0.68 +0.2
3,454,064 + SGL_RS17805 0.70 +0.0

Or see this region's nucleotide sequence