Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06510

Experiment: growth in full media supplemented with 3 .M Cl2Co but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06500 and SGL_RS06505 are separated by 6 nucleotidesSGL_RS06505 and SGL_RS06510 are separated by 125 nucleotidesSGL_RS06510 and SGL_RS06515 are separated by 211 nucleotides SGL_RS06500: SGL_RS06500 - glycosyltransferase family 4 protein, at 986,492 to 987,733 _RS06500 SGL_RS06505: SGL_RS06505 - twin-arginine translocase TatA/TatE family subunit, at 987,740 to 987,946 _RS06505 SGL_RS06510: SGL_RS06510 - YdiU family protein, at 988,072 to 989,505 _RS06510 SGL_RS06515: SGL_RS06515 - ATP-dependent zinc metalloprotease FtsH4, at 989,717 to 991,603 _RS06515 Position (kb) 988 989 990Strain fitness (log2 ratio) -1 0 1at 987.559 kb on + strand, within SGL_RS06500at 987.647 kb on - strandat 988.180 kb on - strandat 988.381 kb on + strand, within SGL_RS06510at 988.448 kb on - strand, within SGL_RS06510at 988.470 kb on + strand, within SGL_RS06510at 988.490 kb on - strand, within SGL_RS06510at 988.698 kb on - strand, within SGL_RS06510at 988.704 kb on + strand, within SGL_RS06510at 988.881 kb on - strand, within SGL_RS06510at 989.012 kb on - strand, within SGL_RS06510at 989.747 kb on - strandat 989.940 kb on + strand, within SGL_RS06515at 989.948 kb on - strand, within SGL_RS06515at 990.122 kb on - strand, within SGL_RS06515at 990.153 kb on - strand, within SGL_RS06515at 990.200 kb on - strand, within SGL_RS06515at 990.200 kb on - strand, within SGL_RS06515at 990.272 kb on - strand, within SGL_RS06515

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co but diluted to prevent light attenuation
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987,559 + SGL_RS06500 0.86 -0.0
987,647 - +0.1
988,180 - +0.1
988,381 + SGL_RS06510 0.22 -0.0
988,448 - SGL_RS06510 0.26 +0.3
988,470 + SGL_RS06510 0.28 +0.5
988,490 - SGL_RS06510 0.29 +0.4
988,698 - SGL_RS06510 0.44 +0.4
988,704 + SGL_RS06510 0.44 +0.5
988,881 - SGL_RS06510 0.56 +0.9
989,012 - SGL_RS06510 0.66 -0.3
989,747 - +1.1
989,940 + SGL_RS06515 0.12 -0.1
989,948 - SGL_RS06515 0.12 +1.5
990,122 - SGL_RS06515 0.21 +0.2
990,153 - SGL_RS06515 0.23 -0.3
990,200 - SGL_RS06515 0.26 -0.3
990,200 - SGL_RS06515 0.26 +0.3
990,272 - SGL_RS06515 0.29 +0.6

Or see this region's nucleotide sequence