Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15435

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15430 and SGL_RS15435 are separated by 60 nucleotidesSGL_RS15435 and SGL_RS15440 are separated by 121 nucleotides SGL_RS15430: SGL_RS15430 - Ycf66 family protein, at 2,913,111 to 2,914,124 _RS15430 SGL_RS15435: SGL_RS15435 - PD40 domain-containing protein, at 2,914,185 to 2,914,706 _RS15435 SGL_RS15440: SGL_RS15440 - protochlorophyllide reductase, at 2,914,828 to 2,915,796 _RS15440 Position (kb) 2914 2915Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2914.159 kb on + strandat 2914.159 kb on + strandat 2914.177 kb on + strandat 2914.179 kb on - strandat 2914.204 kb on + strandat 2914.204 kb on + strandat 2914.400 kb on - strand, within SGL_RS15435at 2914.401 kb on - strand, within SGL_RS15435at 2914.412 kb on - strand, within SGL_RS15435at 2914.428 kb on + strand, within SGL_RS15435at 2914.463 kb on + strand, within SGL_RS15435at 2914.608 kb on - strand, within SGL_RS15435at 2914.614 kb on - strand, within SGL_RS15435

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
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2,914,159 + -2.9
2,914,159 + -2.4
2,914,177 + -2.1
2,914,179 - -2.6
2,914,204 + -3.1
2,914,204 + -2.8
2,914,400 - SGL_RS15435 0.41 -5.4
2,914,401 - SGL_RS15435 0.41 -1.6
2,914,412 - SGL_RS15435 0.43 -5.1
2,914,428 + SGL_RS15435 0.47 -5.5
2,914,463 + SGL_RS15435 0.53 -3.1
2,914,608 - SGL_RS15435 0.81 -4.0
2,914,614 - SGL_RS15435 0.82 -4.5

Or see this region's nucleotide sequence