Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14930

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14920 and SGL_RS14925 are separated by 225 nucleotidesSGL_RS14925 and SGL_RS14930 are separated by 34 nucleotidesSGL_RS14930 and SGL_RS14935 are separated by 19 nucleotidesSGL_RS14935 and SGL_RS14940 are separated by 70 nucleotides SGL_RS14920: SGL_RS14920 - cation:proton antiporter, at 2,801,140 to 2,803,035 _RS14920 SGL_RS14925: SGL_RS14925 - tRNA-Cys, at 2,803,261 to 2,803,331 _RS14925 SGL_RS14930: SGL_RS14930 - type I methionyl aminopeptidase, at 2,803,366 to 2,804,208 _RS14930 SGL_RS14935: SGL_RS14935 - ferredoxin:thioredoxin reductase, at 2,804,228 to 2,804,584 _RS14935 SGL_RS14940: SGL_RS14940 - alpha/beta hydrolase, at 2,804,655 to 2,805,692 _RS14940 Position (kb) 2803 2804 2805Strain fitness (log2 ratio) -2 -1 0 1at 2802.527 kb on + strand, within SGL_RS14920at 2802.582 kb on - strand, within SGL_RS14920at 2802.780 kb on + strand, within SGL_RS14920at 2802.904 kb on + strandat 2803.071 kb on + strandat 2803.141 kb on - strandat 2803.563 kb on + strand, within SGL_RS14930at 2803.566 kb on - strand, within SGL_RS14930at 2803.625 kb on - strand, within SGL_RS14930at 2803.646 kb on + strand, within SGL_RS14930at 2803.781 kb on + strand, within SGL_RS14930at 2803.781 kb on + strand, within SGL_RS14930at 2803.781 kb on + strand, within SGL_RS14930at 2803.781 kb on + strand, within SGL_RS14930at 2804.037 kb on - strand, within SGL_RS14930at 2804.164 kb on + strandat 2804.171 kb on + strandat 2804.172 kb on - strandat 2804.641 kb on - strandat 2804.664 kb on - strandat 2804.811 kb on - strand, within SGL_RS14940at 2804.906 kb on + strand, within SGL_RS14940at 2804.950 kb on - strand, within SGL_RS14940at 2805.171 kb on + strand, within SGL_RS14940at 2805.179 kb on - strand, within SGL_RS14940at 2805.179 kb on - strand, within SGL_RS14940

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
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2,802,527 + SGL_RS14920 0.73 -1.9
2,802,582 - SGL_RS14920 0.76 +0.7
2,802,780 + SGL_RS14920 0.86 +0.7
2,802,904 + -0.3
2,803,071 + -2.5
2,803,141 - -0.0
2,803,563 + SGL_RS14930 0.23 -0.6
2,803,566 - SGL_RS14930 0.24 -0.5
2,803,625 - SGL_RS14930 0.31 -1.3
2,803,646 + SGL_RS14930 0.33 -2.2
2,803,781 + SGL_RS14930 0.49 -1.9
2,803,781 + SGL_RS14930 0.49 -1.3
2,803,781 + SGL_RS14930 0.49 -1.6
2,803,781 + SGL_RS14930 0.49 -1.2
2,804,037 - SGL_RS14930 0.80 -2.2
2,804,164 + -0.9
2,804,171 + -0.4
2,804,172 - -0.5
2,804,641 - -2.3
2,804,664 - +0.1
2,804,811 - SGL_RS14940 0.15 -0.1
2,804,906 + SGL_RS14940 0.24 -0.1
2,804,950 - SGL_RS14940 0.28 -0.1
2,805,171 + SGL_RS14940 0.50 +0.3
2,805,179 - SGL_RS14940 0.50 -0.3
2,805,179 - SGL_RS14940 0.50 -0.1

Or see this region's nucleotide sequence