Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14425

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14415 and SGL_RS14420 overlap by 1 nucleotidesSGL_RS14420 and SGL_RS14425 are separated by 82 nucleotidesSGL_RS14425 and SGL_RS14430 overlap by 79 nucleotidesSGL_RS14430 and SGL_RS14435 are separated by 2 nucleotides SGL_RS14415: SGL_RS14415 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 2,687,952 to 2,690,534 _RS14415 SGL_RS14420: SGL_RS14420 - TIGR04168 family protein, at 2,690,534 to 2,691,445 _RS14420 SGL_RS14425: SGL_RS14425 - energy-coupling factor ABC transporter ATP-binding protein, at 2,691,528 to 2,692,382 _RS14425 SGL_RS14430: SGL_RS14430 - cobalt ECF transporter T component CbiQ, at 2,692,304 to 2,693,077 _RS14430 SGL_RS14435: SGL_RS14435 - cobalt transporter CbiM, at 2,693,080 to 2,693,724 _RS14435 Position (kb) 2691 2692 2693Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2690.528 kb on + strandat 2690.538 kb on + strandat 2690.564 kb on - strandat 2690.639 kb on - strand, within SGL_RS14420at 2690.825 kb on + strand, within SGL_RS14420at 2690.892 kb on + strand, within SGL_RS14420at 2690.901 kb on - strand, within SGL_RS14420at 2690.946 kb on - strand, within SGL_RS14420at 2691.141 kb on - strand, within SGL_RS14420at 2691.171 kb on - strand, within SGL_RS14420at 2691.194 kb on - strand, within SGL_RS14420at 2691.274 kb on - strand, within SGL_RS14420at 2691.382 kb on + strandat 2691.769 kb on - strand, within SGL_RS14425at 2691.769 kb on - strand, within SGL_RS14425at 2691.848 kb on - strand, within SGL_RS14425at 2692.017 kb on + strand, within SGL_RS14425at 2692.034 kb on + strand, within SGL_RS14425at 2692.146 kb on + strand, within SGL_RS14425at 2692.220 kb on - strand, within SGL_RS14425at 2692.317 kb on - strandat 2692.364 kb on + strandat 2692.372 kb on - strandat 2692.440 kb on + strand, within SGL_RS14430at 2692.440 kb on + strand, within SGL_RS14430at 2692.468 kb on + strand, within SGL_RS14430at 2692.476 kb on - strand, within SGL_RS14430at 2692.476 kb on - strand, within SGL_RS14430at 2692.543 kb on + strand, within SGL_RS14430at 2692.551 kb on - strand, within SGL_RS14430at 2692.564 kb on - strand, within SGL_RS14430at 2692.645 kb on - strand, within SGL_RS14430at 2692.970 kb on + strand, within SGL_RS14430at 2693.046 kb on + strandat 2693.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
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2,690,528 + -0.3
2,690,538 + +0.0
2,690,564 - +0.2
2,690,639 - SGL_RS14420 0.12 -1.0
2,690,825 + SGL_RS14420 0.32 +0.3
2,690,892 + SGL_RS14420 0.39 +0.2
2,690,901 - SGL_RS14420 0.40 +0.1
2,690,946 - SGL_RS14420 0.45 +0.2
2,691,141 - SGL_RS14420 0.67 +0.0
2,691,171 - SGL_RS14420 0.70 -0.1
2,691,194 - SGL_RS14420 0.72 +0.2
2,691,274 - SGL_RS14420 0.81 +0.7
2,691,382 + +0.1
2,691,769 - SGL_RS14425 0.28 -0.9
2,691,769 - SGL_RS14425 0.28 -2.3
2,691,848 - SGL_RS14425 0.37 -0.3
2,692,017 + SGL_RS14425 0.57 -3.2
2,692,034 + SGL_RS14425 0.59 -1.6
2,692,146 + SGL_RS14425 0.72 -1.6
2,692,220 - SGL_RS14425 0.81 -1.7
2,692,317 - -0.4
2,692,364 + -1.3
2,692,372 - -2.1
2,692,440 + SGL_RS14430 0.18 -0.6
2,692,440 + SGL_RS14430 0.18 -1.6
2,692,468 + SGL_RS14430 0.21 +1.7
2,692,476 - SGL_RS14430 0.22 -0.3
2,692,476 - SGL_RS14430 0.22 -1.3
2,692,543 + SGL_RS14430 0.31 -3.1
2,692,551 - SGL_RS14430 0.32 -4.6
2,692,564 - SGL_RS14430 0.34 -2.6
2,692,645 - SGL_RS14430 0.44 -1.3
2,692,970 + SGL_RS14430 0.86 -1.9
2,693,046 + +1.4
2,693,067 + -0.3

Or see this region's nucleotide sequence