Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14320

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14315 and SGL_RS14320 are separated by 152 nucleotidesSGL_RS14320 and SGL_RS14325 are separated by 20 nucleotides SGL_RS14315: SGL_RS14315 - folate/biopterin family MFS transporter, at 2,664,403 to 2,665,887 _RS14315 SGL_RS14320: SGL_RS14320 - site-2 protease family protein, at 2,666,040 to 2,667,521 _RS14320 SGL_RS14325: SGL_RS14325 - ABC transporter substrate-binding protein, at 2,667,542 to 2,668,936 _RS14325 Position (kb) 2666 2667 2668Strain fitness (log2 ratio) -2 -1 0 1at 2665.090 kb on - strand, within SGL_RS14315at 2665.294 kb on - strand, within SGL_RS14315at 2665.448 kb on + strand, within SGL_RS14315at 2665.468 kb on + strand, within SGL_RS14315at 2665.509 kb on + strand, within SGL_RS14315at 2665.581 kb on - strand, within SGL_RS14315at 2665.664 kb on + strand, within SGL_RS14315at 2665.671 kb on + strand, within SGL_RS14315at 2665.695 kb on - strand, within SGL_RS14315at 2665.704 kb on + strand, within SGL_RS14315at 2665.783 kb on + strandat 2665.783 kb on + strandat 2665.932 kb on - strandat 2666.023 kb on - strandat 2666.023 kb on - strandat 2666.251 kb on + strand, within SGL_RS14320at 2666.421 kb on + strand, within SGL_RS14320at 2666.423 kb on + strand, within SGL_RS14320at 2666.423 kb on + strand, within SGL_RS14320at 2666.431 kb on - strand, within SGL_RS14320at 2666.679 kb on + strand, within SGL_RS14320at 2666.762 kb on + strand, within SGL_RS14320at 2667.022 kb on + strand, within SGL_RS14320at 2667.027 kb on + strand, within SGL_RS14320at 2667.035 kb on - strand, within SGL_RS14320at 2667.035 kb on - strand, within SGL_RS14320at 2667.039 kb on + strand, within SGL_RS14320at 2667.159 kb on + strand, within SGL_RS14320at 2667.167 kb on - strand, within SGL_RS14320at 2667.222 kb on - strand, within SGL_RS14320at 2667.339 kb on - strand, within SGL_RS14320at 2667.453 kb on - strandat 2667.599 kb on - strandat 2667.619 kb on - strandat 2667.713 kb on + strand, within SGL_RS14325at 2667.745 kb on - strand, within SGL_RS14325at 2667.762 kb on - strand, within SGL_RS14325at 2667.774 kb on + strand, within SGL_RS14325at 2667.839 kb on - strand, within SGL_RS14325at 2667.846 kb on - strand, within SGL_RS14325at 2667.870 kb on - strand, within SGL_RS14325at 2667.913 kb on + strand, within SGL_RS14325at 2667.939 kb on - strand, within SGL_RS14325at 2667.939 kb on - strand, within SGL_RS14325at 2667.956 kb on + strand, within SGL_RS14325at 2668.015 kb on - strand, within SGL_RS14325at 2668.184 kb on + strand, within SGL_RS14325at 2668.222 kb on - strand, within SGL_RS14325at 2668.227 kb on + strand, within SGL_RS14325at 2668.234 kb on - strand, within SGL_RS14325at 2668.296 kb on + strand, within SGL_RS14325at 2668.306 kb on + strand, within SGL_RS14325at 2668.306 kb on + strand, within SGL_RS14325at 2668.314 kb on - strand, within SGL_RS14325at 2668.364 kb on - strand, within SGL_RS14325at 2668.372 kb on - strand, within SGL_RS14325at 2668.508 kb on + strand, within SGL_RS14325

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
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2,665,090 - SGL_RS14315 0.46 -0.1
2,665,294 - SGL_RS14315 0.60 +0.2
2,665,448 + SGL_RS14315 0.70 -0.1
2,665,468 + SGL_RS14315 0.72 +0.3
2,665,509 + SGL_RS14315 0.74 -0.2
2,665,581 - SGL_RS14315 0.79 -0.3
2,665,664 + SGL_RS14315 0.85 +0.3
2,665,671 + SGL_RS14315 0.85 +0.1
2,665,695 - SGL_RS14315 0.87 +0.1
2,665,704 + SGL_RS14315 0.88 +0.9
2,665,783 + -0.1
2,665,783 + +0.2
2,665,932 - +0.3
2,666,023 - -0.7
2,666,023 - -0.9
2,666,251 + SGL_RS14320 0.14 -0.3
2,666,421 + SGL_RS14320 0.26 -1.0
2,666,423 + SGL_RS14320 0.26 -1.0
2,666,423 + SGL_RS14320 0.26 -1.2
2,666,431 - SGL_RS14320 0.26 -1.0
2,666,679 + SGL_RS14320 0.43 -1.9
2,666,762 + SGL_RS14320 0.49 -0.8
2,667,022 + SGL_RS14320 0.66 -0.6
2,667,027 + SGL_RS14320 0.67 -1.2
2,667,035 - SGL_RS14320 0.67 -1.1
2,667,035 - SGL_RS14320 0.67 -1.1
2,667,039 + SGL_RS14320 0.67 -0.8
2,667,159 + SGL_RS14320 0.76 -0.8
2,667,167 - SGL_RS14320 0.76 -1.6
2,667,222 - SGL_RS14320 0.80 -1.3
2,667,339 - SGL_RS14320 0.88 -0.9
2,667,453 - -0.6
2,667,599 - -0.1
2,667,619 - +0.2
2,667,713 + SGL_RS14325 0.12 +0.1
2,667,745 - SGL_RS14325 0.15 +0.0
2,667,762 - SGL_RS14325 0.16 -0.1
2,667,774 + SGL_RS14325 0.17 +0.1
2,667,839 - SGL_RS14325 0.21 -1.6
2,667,846 - SGL_RS14325 0.22 +0.3
2,667,870 - SGL_RS14325 0.24 +0.3
2,667,913 + SGL_RS14325 0.27 -0.2
2,667,939 - SGL_RS14325 0.28 -0.0
2,667,939 - SGL_RS14325 0.28 -0.2
2,667,956 + SGL_RS14325 0.30 +0.5
2,668,015 - SGL_RS14325 0.34 +0.3
2,668,184 + SGL_RS14325 0.46 +0.0
2,668,222 - SGL_RS14325 0.49 -0.4
2,668,227 + SGL_RS14325 0.49 -0.3
2,668,234 - SGL_RS14325 0.50 +0.2
2,668,296 + SGL_RS14325 0.54 +0.5
2,668,306 + SGL_RS14325 0.55 -0.3
2,668,306 + SGL_RS14325 0.55 -0.5
2,668,314 - SGL_RS14325 0.55 +0.0
2,668,364 - SGL_RS14325 0.59 -1.1
2,668,372 - SGL_RS14325 0.59 -0.0
2,668,508 + SGL_RS14325 0.69 +0.1

Or see this region's nucleotide sequence