Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13900 and SGL_RS13905 are separated by 46 nucleotides SGL_RS13905 and SGL_RS13910 are separated by 179 nucleotides SGL_RS13910 and SGL_RS13915 are separated by 61 nucleotides SGL_RS13915 and SGL_RS13920 are separated by 26 nucleotides SGL_RS13920 and SGL_RS13925 are separated by 74 nucleotides
SGL_RS13900: SGL_RS13900 - AI-2E family transporter, at 2,580,710 to 2,581,897
_RS13900
SGL_RS13905: SGL_RS13905 - hypothetical protein, at 2,581,944 to 2,582,366
_RS13905
SGL_RS13910: SGL_RS13910 - phasin family protein, at 2,582,546 to 2,582,869
_RS13910
SGL_RS13915: SGL_RS13915 - tRNA-Ala, at 2,582,931 to 2,583,003
_RS13915
SGL_RS13920: SGL_RS13920 - hypothetical protein, at 2,583,030 to 2,583,335
_RS13920
SGL_RS13925: SGL_RS13925 - patatin-like phospholipase family protein, at 2,583,410 to 2,584,519
_RS13925
Position (kb)
2582
2583 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2581.562 kb on - strand, within SGL_RS13900 at 2581.564 kb on + strand, within SGL_RS13900 at 2581.581 kb on - strand, within SGL_RS13900 at 2581.594 kb on - strand, within SGL_RS13900 at 2581.621 kb on + strand, within SGL_RS13900 at 2581.768 kb on - strand, within SGL_RS13900 at 2581.777 kb on + strand, within SGL_RS13900 at 2581.822 kb on - strand at 2581.939 kb on - strand at 2582.102 kb on + strand, within SGL_RS13905 at 2582.110 kb on - strand, within SGL_RS13905 at 2582.150 kb on + strand, within SGL_RS13905 at 2582.195 kb on + strand, within SGL_RS13905 at 2582.196 kb on + strand, within SGL_RS13905 at 2582.246 kb on + strand, within SGL_RS13905 at 2582.279 kb on - strand, within SGL_RS13905 at 2582.379 kb on + strand at 2582.408 kb on - strand at 2582.467 kb on + strand at 2582.499 kb on - strand at 2582.573 kb on + strand at 2582.594 kb on - strand, within SGL_RS13910 at 2582.814 kb on + strand, within SGL_RS13910 at 2582.819 kb on - strand, within SGL_RS13910 at 2582.870 kb on + strand at 2582.870 kb on - strand at 2582.874 kb on + strand at 2582.959 kb on - strand, within SGL_RS13915 at 2582.977 kb on + strand, within SGL_RS13915 at 2583.023 kb on - strand at 2583.136 kb on + strand, within SGL_RS13920 at 2583.233 kb on + strand, within SGL_RS13920 at 2583.263 kb on + strand, within SGL_RS13920 at 2583.379 kb on - strand at 2583.479 kb on - strand at 2583.718 kb on + strand, within SGL_RS13925 at 2583.718 kb on + strand, within SGL_RS13925 at 2583.726 kb on - strand, within SGL_RS13925 at 2583.726 kb on - strand, within SGL_RS13925 at 2583.748 kb on - strand, within SGL_RS13925 at 2583.770 kb on + strand, within SGL_RS13925 at 2583.770 kb on + strand, within SGL_RS13925 at 2583.778 kb on - strand, within SGL_RS13925
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation remove 2,581,562 - SGL_RS13900 0.72 -1.7 2,581,564 + SGL_RS13900 0.72 -3.0 2,581,581 - SGL_RS13900 0.73 -2.1 2,581,594 - SGL_RS13900 0.74 -1.6 2,581,621 + SGL_RS13900 0.77 -4.1 2,581,768 - SGL_RS13900 0.89 -3.6 2,581,777 + SGL_RS13900 0.90 -2.8 2,581,822 - -3.3 2,581,939 - -4.8 2,582,102 + SGL_RS13905 0.37 -2.9 2,582,110 - SGL_RS13905 0.39 -2.5 2,582,150 + SGL_RS13905 0.49 -2.5 2,582,195 + SGL_RS13905 0.59 -3.1 2,582,196 + SGL_RS13905 0.60 -3.2 2,582,246 + SGL_RS13905 0.71 -2.6 2,582,279 - SGL_RS13905 0.79 -1.5 2,582,379 + +0.0 2,582,408 - +0.6 2,582,467 + -0.3 2,582,499 - -0.8 2,582,573 + -2.0 2,582,594 - SGL_RS13910 0.15 -4.1 2,582,814 + SGL_RS13910 0.83 -3.8 2,582,819 - SGL_RS13910 0.84 -1.9 2,582,870 + +0.1 2,582,870 - +0.2 2,582,874 + -0.4 2,582,959 - SGL_RS13915 0.38 +0.1 2,582,977 + SGL_RS13915 0.63 -1.9 2,583,023 - -0.4 2,583,136 + SGL_RS13920 0.35 +0.5 2,583,233 + SGL_RS13920 0.66 +0.9 2,583,263 + SGL_RS13920 0.76 -0.1 2,583,379 - -0.1 2,583,479 - +0.2 2,583,718 + SGL_RS13925 0.28 +0.1 2,583,718 + SGL_RS13925 0.28 +0.2 2,583,726 - SGL_RS13925 0.28 +0.2 2,583,726 - SGL_RS13925 0.28 +0.1 2,583,748 - SGL_RS13925 0.30 +0.0 2,583,770 + SGL_RS13925 0.32 +0.1 2,583,770 + SGL_RS13925 0.32 +0.1 2,583,778 - SGL_RS13925 0.33 +1.2
Or see this region's nucleotide sequence