Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13910

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13900 and SGL_RS13905 are separated by 46 nucleotidesSGL_RS13905 and SGL_RS13910 are separated by 179 nucleotidesSGL_RS13910 and SGL_RS13915 are separated by 61 nucleotidesSGL_RS13915 and SGL_RS13920 are separated by 26 nucleotidesSGL_RS13920 and SGL_RS13925 are separated by 74 nucleotides SGL_RS13900: SGL_RS13900 - AI-2E family transporter, at 2,580,710 to 2,581,897 _RS13900 SGL_RS13905: SGL_RS13905 - hypothetical protein, at 2,581,944 to 2,582,366 _RS13905 SGL_RS13910: SGL_RS13910 - phasin family protein, at 2,582,546 to 2,582,869 _RS13910 SGL_RS13915: SGL_RS13915 - tRNA-Ala, at 2,582,931 to 2,583,003 _RS13915 SGL_RS13920: SGL_RS13920 - hypothetical protein, at 2,583,030 to 2,583,335 _RS13920 SGL_RS13925: SGL_RS13925 - patatin-like phospholipase family protein, at 2,583,410 to 2,584,519 _RS13925 Position (kb) 2582 2583Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2581.562 kb on - strand, within SGL_RS13900at 2581.564 kb on + strand, within SGL_RS13900at 2581.581 kb on - strand, within SGL_RS13900at 2581.594 kb on - strand, within SGL_RS13900at 2581.621 kb on + strand, within SGL_RS13900at 2581.768 kb on - strand, within SGL_RS13900at 2581.777 kb on + strand, within SGL_RS13900at 2581.822 kb on - strandat 2581.939 kb on - strandat 2582.102 kb on + strand, within SGL_RS13905at 2582.110 kb on - strand, within SGL_RS13905at 2582.150 kb on + strand, within SGL_RS13905at 2582.195 kb on + strand, within SGL_RS13905at 2582.196 kb on + strand, within SGL_RS13905at 2582.246 kb on + strand, within SGL_RS13905at 2582.279 kb on - strand, within SGL_RS13905at 2582.379 kb on + strandat 2582.408 kb on - strandat 2582.467 kb on + strandat 2582.499 kb on - strandat 2582.573 kb on + strandat 2582.594 kb on - strand, within SGL_RS13910at 2582.814 kb on + strand, within SGL_RS13910at 2582.819 kb on - strand, within SGL_RS13910at 2582.870 kb on + strandat 2582.870 kb on - strandat 2582.874 kb on + strandat 2582.959 kb on - strand, within SGL_RS13915at 2582.977 kb on + strand, within SGL_RS13915at 2583.023 kb on - strandat 2583.136 kb on + strand, within SGL_RS13920at 2583.233 kb on + strand, within SGL_RS13920at 2583.263 kb on + strand, within SGL_RS13920at 2583.379 kb on - strandat 2583.479 kb on - strandat 2583.718 kb on + strand, within SGL_RS13925at 2583.718 kb on + strand, within SGL_RS13925at 2583.726 kb on - strand, within SGL_RS13925at 2583.726 kb on - strand, within SGL_RS13925at 2583.748 kb on - strand, within SGL_RS13925at 2583.770 kb on + strand, within SGL_RS13925at 2583.770 kb on + strand, within SGL_RS13925at 2583.778 kb on - strand, within SGL_RS13925

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
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2,581,562 - SGL_RS13900 0.72 -1.7
2,581,564 + SGL_RS13900 0.72 -3.0
2,581,581 - SGL_RS13900 0.73 -2.1
2,581,594 - SGL_RS13900 0.74 -1.6
2,581,621 + SGL_RS13900 0.77 -4.1
2,581,768 - SGL_RS13900 0.89 -3.6
2,581,777 + SGL_RS13900 0.90 -2.8
2,581,822 - -3.3
2,581,939 - -4.8
2,582,102 + SGL_RS13905 0.37 -2.9
2,582,110 - SGL_RS13905 0.39 -2.5
2,582,150 + SGL_RS13905 0.49 -2.5
2,582,195 + SGL_RS13905 0.59 -3.1
2,582,196 + SGL_RS13905 0.60 -3.2
2,582,246 + SGL_RS13905 0.71 -2.6
2,582,279 - SGL_RS13905 0.79 -1.5
2,582,379 + +0.0
2,582,408 - +0.6
2,582,467 + -0.3
2,582,499 - -0.8
2,582,573 + -2.0
2,582,594 - SGL_RS13910 0.15 -4.1
2,582,814 + SGL_RS13910 0.83 -3.8
2,582,819 - SGL_RS13910 0.84 -1.9
2,582,870 + +0.1
2,582,870 - +0.2
2,582,874 + -0.4
2,582,959 - SGL_RS13915 0.38 +0.1
2,582,977 + SGL_RS13915 0.63 -1.9
2,583,023 - -0.4
2,583,136 + SGL_RS13920 0.35 +0.5
2,583,233 + SGL_RS13920 0.66 +0.9
2,583,263 + SGL_RS13920 0.76 -0.1
2,583,379 - -0.1
2,583,479 - +0.2
2,583,718 + SGL_RS13925 0.28 +0.1
2,583,718 + SGL_RS13925 0.28 +0.2
2,583,726 - SGL_RS13925 0.28 +0.2
2,583,726 - SGL_RS13925 0.28 +0.1
2,583,748 - SGL_RS13925 0.30 +0.0
2,583,770 + SGL_RS13925 0.32 +0.1
2,583,770 + SGL_RS13925 0.32 +0.1
2,583,778 - SGL_RS13925 0.33 +1.2

Or see this region's nucleotide sequence