Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11885

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11875 and SGL_RS11880 overlap by 37 nucleotidesSGL_RS11880 and SGL_RS11885 are separated by 46 nucleotidesSGL_RS11885 and SGL_RS11890 are separated by 494 nucleotides SGL_RS11875: SGL_RS11875 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,118,198 to 2,119,337 _RS11875 SGL_RS11880: SGL_RS11880 - hypothetical protein, at 2,119,301 to 2,120,020 _RS11880 SGL_RS11885: SGL_RS11885 - fatty acid desaturase, at 2,120,067 to 2,121,146 _RS11885 SGL_RS11890: SGL_RS11890 - NAD-binding protein, at 2,121,641 to 2,123,347 _RS11890 Position (kb) 2120 2121 2122Strain fitness (log2 ratio) -3 -2 -1 0 1at 2119.218 kb on - strand, within SGL_RS11875at 2119.413 kb on - strand, within SGL_RS11880at 2119.480 kb on + strand, within SGL_RS11880at 2119.488 kb on - strand, within SGL_RS11880at 2119.495 kb on - strand, within SGL_RS11880at 2119.704 kb on - strand, within SGL_RS11880at 2119.722 kb on + strand, within SGL_RS11880at 2119.773 kb on + strand, within SGL_RS11880at 2119.773 kb on + strand, within SGL_RS11880at 2119.781 kb on - strand, within SGL_RS11880at 2119.952 kb on - strandat 2120.087 kb on + strandat 2120.087 kb on - strandat 2120.102 kb on + strandat 2120.382 kb on + strand, within SGL_RS11885at 2120.524 kb on - strand, within SGL_RS11885at 2120.866 kb on + strand, within SGL_RS11885at 2120.881 kb on - strand, within SGL_RS11885at 2120.943 kb on + strand, within SGL_RS11885at 2121.269 kb on + strandat 2121.687 kb on + strandat 2121.751 kb on - strandat 2121.806 kb on - strandat 2121.886 kb on + strand, within SGL_RS11890at 2121.886 kb on + strand, within SGL_RS11890at 2122.021 kb on + strand, within SGL_RS11890at 2122.060 kb on + strand, within SGL_RS11890at 2122.060 kb on + strand, within SGL_RS11890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
remove
2,119,218 - SGL_RS11875 0.89 +0.0
2,119,413 - SGL_RS11880 0.16 +0.2
2,119,480 + SGL_RS11880 0.25 +0.1
2,119,488 - SGL_RS11880 0.26 -1.0
2,119,495 - SGL_RS11880 0.27 +0.4
2,119,704 - SGL_RS11880 0.56 +0.5
2,119,722 + SGL_RS11880 0.58 +0.0
2,119,773 + SGL_RS11880 0.66 +0.0
2,119,773 + SGL_RS11880 0.66 +0.1
2,119,781 - SGL_RS11880 0.67 -0.3
2,119,952 - -0.4
2,120,087 + -2.0
2,120,087 - -2.3
2,120,102 + -3.3
2,120,382 + SGL_RS11885 0.29 -1.1
2,120,524 - SGL_RS11885 0.42 -1.5
2,120,866 + SGL_RS11885 0.74 -1.9
2,120,881 - SGL_RS11885 0.75 -1.4
2,120,943 + SGL_RS11885 0.81 -2.0
2,121,269 + -0.2
2,121,687 + -0.1
2,121,751 - +0.5
2,121,806 - +0.1
2,121,886 + SGL_RS11890 0.14 +0.3
2,121,886 + SGL_RS11890 0.14 -0.4
2,122,021 + SGL_RS11890 0.22 -0.1
2,122,060 + SGL_RS11890 0.25 -0.3
2,122,060 + SGL_RS11890 0.25 -0.2

Or see this region's nucleotide sequence