Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11360

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11355 and SGL_RS11360 are separated by 151 nucleotidesSGL_RS11360 and SGL_RS11365 are separated by 89 nucleotidesSGL_RS11365 and SGL_RS11370 are separated by 127 nucleotides SGL_RS11355: SGL_RS11355 - arsenite efflux transporter Acr3, at 2,010,218 to 2,011,369 _RS11355 SGL_RS11360: SGL_RS11360 - arsenical resistance protein ArsH, at 2,011,521 to 2,012,141 _RS11360 SGL_RS11365: SGL_RS11365 - thioredoxin-dependent arsenate reductase, at 2,012,231 to 2,012,626 _RS11365 SGL_RS11370: SGL_RS11370 - response regulator transcription factor, at 2,012,754 to 2,013,485 _RS11370 Position (kb) 2011 2012 2013Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2010.547 kb on + strand, within SGL_RS11355at 2010.616 kb on - strand, within SGL_RS11355at 2010.616 kb on - strand, within SGL_RS11355at 2010.662 kb on - strand, within SGL_RS11355at 2010.664 kb on + strand, within SGL_RS11355at 2010.696 kb on - strand, within SGL_RS11355at 2011.106 kb on - strand, within SGL_RS11355at 2011.124 kb on - strand, within SGL_RS11355at 2011.134 kb on + strand, within SGL_RS11355at 2011.217 kb on + strand, within SGL_RS11355at 2011.259 kb on + strandat 2011.740 kb on - strand, within SGL_RS11360at 2011.852 kb on + strand, within SGL_RS11360at 2011.960 kb on - strand, within SGL_RS11360at 2012.047 kb on - strand, within SGL_RS11360at 2012.162 kb on + strandat 2012.221 kb on + strandat 2012.282 kb on + strand, within SGL_RS11365at 2012.339 kb on - strand, within SGL_RS11365at 2012.412 kb on + strand, within SGL_RS11365at 2012.412 kb on + strand, within SGL_RS11365at 2012.412 kb on + strand, within SGL_RS11365at 2012.571 kb on - strand, within SGL_RS11365at 2012.630 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
remove
2,010,547 + SGL_RS11355 0.29 -4.9
2,010,616 - SGL_RS11355 0.35 -3.7
2,010,616 - SGL_RS11355 0.35 -2.3
2,010,662 - SGL_RS11355 0.39 -6.6
2,010,664 + SGL_RS11355 0.39 -3.1
2,010,696 - SGL_RS11355 0.41 -8.1
2,011,106 - SGL_RS11355 0.77 -4.8
2,011,124 - SGL_RS11355 0.79 -7.1
2,011,134 + SGL_RS11355 0.80 -6.0
2,011,217 + SGL_RS11355 0.87 -7.4
2,011,259 + -4.5
2,011,740 - SGL_RS11360 0.35 -1.2
2,011,852 + SGL_RS11360 0.53 -1.1
2,011,960 - SGL_RS11360 0.71 -1.1
2,012,047 - SGL_RS11360 0.85 -1.2
2,012,162 + +0.9
2,012,221 + -0.1
2,012,282 + SGL_RS11365 0.13 -0.2
2,012,339 - SGL_RS11365 0.27 +0.3
2,012,412 + SGL_RS11365 0.46 +0.0
2,012,412 + SGL_RS11365 0.46 -0.3
2,012,412 + SGL_RS11365 0.46 +0.4
2,012,571 - SGL_RS11365 0.86 -0.1
2,012,630 + -0.3

Or see this region's nucleotide sequence