Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10420

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10415 and SGL_RS10420 overlap by 4 nucleotidesSGL_RS10420 and SGL_RS10425 overlap by 4 nucleotides SGL_RS10415: SGL_RS10415 - SpoIIE family protein phosphatase, at 1,811,746 to 1,813,557 _RS10415 SGL_RS10420: SGL_RS10420 - methionine ABC transporter ATP-binding protein, at 1,813,554 to 1,814,234 _RS10420 SGL_RS10425: SGL_RS10425 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,814,231 to 1,815,304 _RS10425 Position (kb) 1813 1814 1815Strain fitness (log2 ratio) -2 -1 0 1at 1812.640 kb on - strand, within SGL_RS10415at 1812.996 kb on - strand, within SGL_RS10415at 1813.343 kb on + strand, within SGL_RS10415at 1813.361 kb on - strand, within SGL_RS10415at 1813.697 kb on + strand, within SGL_RS10420at 1813.874 kb on + strand, within SGL_RS10420at 1814.255 kb on - strandat 1814.392 kb on - strand, within SGL_RS10425at 1814.615 kb on + strand, within SGL_RS10425at 1814.680 kb on - strand, within SGL_RS10425at 1814.728 kb on + strand, within SGL_RS10425at 1814.747 kb on - strand, within SGL_RS10425at 1814.906 kb on + strand, within SGL_RS10425at 1815.018 kb on - strand, within SGL_RS10425at 1815.134 kb on + strand, within SGL_RS10425at 1815.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
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1,812,640 - SGL_RS10415 0.49 -0.2
1,812,996 - SGL_RS10415 0.69 +0.4
1,813,343 + SGL_RS10415 0.88 +0.6
1,813,361 - SGL_RS10415 0.89 -0.6
1,813,697 + SGL_RS10420 0.21 -1.4
1,813,874 + SGL_RS10420 0.47 -0.3
1,814,255 - -0.2
1,814,392 - SGL_RS10425 0.15 -0.7
1,814,615 + SGL_RS10425 0.36 -1.9
1,814,680 - SGL_RS10425 0.42 -0.7
1,814,728 + SGL_RS10425 0.46 -2.3
1,814,747 - SGL_RS10425 0.48 -1.5
1,814,906 + SGL_RS10425 0.63 -1.5
1,815,018 - SGL_RS10425 0.73 -1.3
1,815,134 + SGL_RS10425 0.84 +0.3
1,815,221 + -0.2

Or see this region's nucleotide sequence