Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09890

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09880 and SGL_RS09885 are separated by 461 nucleotidesSGL_RS09885 and SGL_RS09890 are separated by 56 nucleotidesSGL_RS09890 and SGL_RS09895 are separated by 57 nucleotidesSGL_RS09895 and SGL_RS19875 are separated by 11 nucleotidesSGL_RS19875 and SGL_RS19215 are separated by 20 nucleotides SGL_RS09880: SGL_RS09880 - hypothetical protein, at 1,699,970 to 1,700,431 _RS09880 SGL_RS09885: SGL_RS09885 - NAD(P)H-quinone oxidoreductase subunit L, at 1,700,893 to 1,701,135 _RS09885 SGL_RS09890: SGL_RS09890 - DUF3007 family protein, at 1,701,192 to 1,701,557 _RS09890 SGL_RS09895: SGL_RS09895 - DUF177 domain-containing protein, at 1,701,615 to 1,702,118 _RS09895 SGL_RS19875: SGL_RS19875 - IS1 family transposase, at 1,702,130 to 1,702,279 _RS19875 SGL_RS19215: SGL_RS19215 - transposase, at 1,702,300 to 1,703,319 _RS19215 Position (kb) 1701 1702Strain fitness (log2 ratio) -3 -2 -1 0 1at 1700.206 kb on + strand, within SGL_RS09880at 1700.241 kb on + strand, within SGL_RS09880at 1700.267 kb on + strand, within SGL_RS09880at 1700.285 kb on - strand, within SGL_RS09880at 1700.389 kb on - strandat 1700.427 kb on + strandat 1700.603 kb on - strandat 1700.611 kb on + strandat 1701.160 kb on - strandat 1701.220 kb on - strandat 1701.331 kb on + strand, within SGL_RS09890at 1701.371 kb on - strand, within SGL_RS09890at 1701.376 kb on - strand, within SGL_RS09890at 1701.452 kb on - strand, within SGL_RS09890at 1701.481 kb on + strand, within SGL_RS09890at 1701.582 kb on - strandat 1701.624 kb on - strandat 1701.717 kb on - strand, within SGL_RS09895at 1701.717 kb on - strand, within SGL_RS09895at 1701.820 kb on + strand, within SGL_RS09895at 1701.916 kb on + strand, within SGL_RS09895at 1701.991 kb on - strand, within SGL_RS09895at 1702.128 kb on + strandat 1702.176 kb on + strand, within SGL_RS19875at 1702.199 kb on - strand, within SGL_RS19875at 1702.493 kb on - strand, within SGL_RS19215at 1702.549 kb on - strand, within SGL_RS19215

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
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1,700,206 + SGL_RS09880 0.51 -0.1
1,700,241 + SGL_RS09880 0.59 +0.2
1,700,267 + SGL_RS09880 0.64 -0.3
1,700,285 - SGL_RS09880 0.68 -0.2
1,700,389 - +0.5
1,700,427 + +0.2
1,700,603 - +0.4
1,700,611 + +0.5
1,701,160 - +0.2
1,701,220 - +0.2
1,701,331 + SGL_RS09890 0.38 -2.3
1,701,371 - SGL_RS09890 0.49 -2.1
1,701,376 - SGL_RS09890 0.50 -2.8
1,701,452 - SGL_RS09890 0.71 -1.9
1,701,481 + SGL_RS09890 0.79 -0.1
1,701,582 - -0.3
1,701,624 - +0.2
1,701,717 - SGL_RS09895 0.20 -0.1
1,701,717 - SGL_RS09895 0.20 +0.2
1,701,820 + SGL_RS09895 0.41 +0.2
1,701,916 + SGL_RS09895 0.60 +0.1
1,701,991 - SGL_RS09895 0.75 +0.1
1,702,128 + -0.1
1,702,176 + SGL_RS19875 0.31 -0.4
1,702,199 - SGL_RS19875 0.46 +0.4
1,702,493 - SGL_RS19215 0.19 -0.4
1,702,549 - SGL_RS19215 0.24 +0.3

Or see this region's nucleotide sequence