Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05465

Experiment: growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS05455 and SGL_RS05460 overlap by 4 nucleotidesSGL_RS05460 and SGL_RS05465 are separated by 39 nucleotidesSGL_RS05465 and SGL_RS05470 are separated by 169 nucleotides SGL_RS05455: SGL_RS05455 - radical SAM family heme chaperone HemW, at 769,053 to 770,291 _RS05455 SGL_RS05460: SGL_RS05460 - nicotinate-nucleotide adenylyltransferase, at 770,288 to 770,890 _RS05460 SGL_RS05465: SGL_RS05465 - hypothetical protein, at 770,930 to 771,481 _RS05465 SGL_RS05470: SGL_RS05470 - dihydropteroate synthase, at 771,651 to 772,520 _RS05470 Position (kb) 770 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1at 770.113 kb on - strand, within SGL_RS05455at 770.391 kb on + strand, within SGL_RS05460at 771.248 kb on - strand, within SGL_RS05465at 771.265 kb on - strand, within SGL_RS05465at 771.332 kb on - strand, within SGL_RS05465at 771.351 kb on + strand, within SGL_RS05465at 771.351 kb on + strand, within SGL_RS05465at 771.426 kb on - strandat 771.547 kb on - strandat 771.566 kb on + strandat 771.574 kb on - strandat 771.597 kb on + strandat 771.648 kb on + strandat 771.663 kb on + strandat 771.710 kb on - strandat 771.769 kb on + strand, within SGL_RS05470at 771.769 kb on + strand, within SGL_RS05470at 771.831 kb on + strand, within SGL_RS05470at 772.008 kb on + strand, within SGL_RS05470at 772.085 kb on + strand, within SGL_RS05470at 772.202 kb on - strand, within SGL_RS05470at 772.290 kb on + strand, within SGL_RS05470at 772.300 kb on + strand, within SGL_RS05470at 772.399 kb on + strand, within SGL_RS05470

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite but diluted to prevent light attenuation
remove
770,113 - SGL_RS05455 0.86 -0.0
770,391 + SGL_RS05460 0.17 -0.3
771,248 - SGL_RS05465 0.58 -1.8
771,265 - SGL_RS05465 0.61 -2.7
771,332 - SGL_RS05465 0.73 -0.8
771,351 + SGL_RS05465 0.76 -1.8
771,351 + SGL_RS05465 0.76 -0.6
771,426 - -1.4
771,547 - -1.9
771,566 + -1.6
771,574 - -1.2
771,597 + -2.9
771,648 + -0.3
771,663 + +0.2
771,710 - -2.7
771,769 + SGL_RS05470 0.14 -0.3
771,769 + SGL_RS05470 0.14 -1.3
771,831 + SGL_RS05470 0.21 -1.1
772,008 + SGL_RS05470 0.41 -1.1
772,085 + SGL_RS05470 0.50 -0.8
772,202 - SGL_RS05470 0.63 -2.8
772,290 + SGL_RS05470 0.73 -0.3
772,300 + SGL_RS05470 0.75 -1.6
772,399 + SGL_RS05470 0.86 -1.6

Or see this region's nucleotide sequence