Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03590

Experiment: growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03585 and SGL_RS03590 overlap by 4 nucleotidesSGL_RS03590 and SGL_RS03595 overlap by 4 nucleotides SGL_RS03585: SGL_RS03585 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 360,030 to 361,166 _RS03585 SGL_RS03590: SGL_RS03590 - ATP-grasp domain-containing protein, at 361,163 to 362,188 _RS03590 SGL_RS03595: SGL_RS03595 - NAD-dependent epimerase/dehydratase family protein, at 362,185 to 363,420 _RS03595 Position (kb) 361 362 363Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 360.203 kb on - strand, within SGL_RS03585at 360.577 kb on + strand, within SGL_RS03585at 360.585 kb on + strand, within SGL_RS03585at 360.597 kb on + strand, within SGL_RS03585at 360.630 kb on + strand, within SGL_RS03585at 360.630 kb on + strand, within SGL_RS03585at 360.653 kb on - strand, within SGL_RS03585at 361.047 kb on - strand, within SGL_RS03585at 361.603 kb on + strand, within SGL_RS03590at 361.847 kb on + strand, within SGL_RS03590at 361.889 kb on - strand, within SGL_RS03590at 361.948 kb on + strand, within SGL_RS03590at 362.055 kb on - strand, within SGL_RS03590at 362.244 kb on - strandat 362.386 kb on - strand, within SGL_RS03595at 362.794 kb on - strand, within SGL_RS03595

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation
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360,203 - SGL_RS03585 0.15 -5.6
360,577 + SGL_RS03585 0.48 -4.8
360,585 + SGL_RS03585 0.49 -3.5
360,597 + SGL_RS03585 0.50 -4.1
360,630 + SGL_RS03585 0.53 -2.2
360,630 + SGL_RS03585 0.53 -4.2
360,653 - SGL_RS03585 0.55 -7.5
361,047 - SGL_RS03585 0.89 -4.7
361,603 + SGL_RS03590 0.43 -5.6
361,847 + SGL_RS03590 0.67 -5.3
361,889 - SGL_RS03590 0.71 -5.0
361,948 + SGL_RS03590 0.77 -4.2
362,055 - SGL_RS03590 0.87 -5.8
362,244 - +0.0
362,386 - SGL_RS03595 0.16 +0.4
362,794 - SGL_RS03595 0.49 -0.8

Or see this region's nucleotide sequence