Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10525

Experiment: growth in full media but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10520 and SGL_RS10525 are separated by 130 nucleotidesSGL_RS10525 and SGL_RS10530 are separated by 69 nucleotidesSGL_RS10530 and SGL_RS10535 are separated by 71 nucleotidesSGL_RS10535 and SGL_RS10540 are separated by 272 nucleotides SGL_RS10520: SGL_RS10520 - J domain-containing protein, at 1,829,553 to 1,830,497 _RS10520 SGL_RS10525: SGL_RS10525 - inositol monophosphatase family protein, at 1,830,628 to 1,831,491 _RS10525 SGL_RS10530: SGL_RS10530 - 2Fe-2S iron-sulfur cluster-binding protein, at 1,831,561 to 1,831,929 _RS10530 SGL_RS10535: SGL_RS10535 - tRNA-Ser, at 1,832,001 to 1,832,087 _RS10535 SGL_RS10540: SGL_RS10540 - C40 family peptidase, at 1,832,360 to 1,833,169 _RS10540 Position (kb) 1830 1831 1832Strain fitness (log2 ratio) -1 0 1at 1829.699 kb on - strand, within SGL_RS10520at 1829.714 kb on - strand, within SGL_RS10520at 1829.820 kb on + strand, within SGL_RS10520at 1829.938 kb on + strand, within SGL_RS10520at 1830.065 kb on - strand, within SGL_RS10520at 1830.200 kb on + strand, within SGL_RS10520at 1830.347 kb on + strand, within SGL_RS10520at 1830.669 kb on + strandat 1830.675 kb on - strandat 1830.740 kb on + strand, within SGL_RS10525at 1830.899 kb on - strand, within SGL_RS10525at 1830.976 kb on + strand, within SGL_RS10525at 1831.164 kb on - strand, within SGL_RS10525at 1831.169 kb on - strand, within SGL_RS10525at 1831.174 kb on - strand, within SGL_RS10525at 1831.272 kb on + strand, within SGL_RS10525at 1831.280 kb on - strand, within SGL_RS10525at 1831.567 kb on - strandat 1831.567 kb on - strandat 1831.591 kb on + strandat 1832.103 kb on - strandat 1832.120 kb on + strandat 1832.169 kb on + strandat 1832.171 kb on + strandat 1832.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media but diluted to prevent light attenuation
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1,829,699 - SGL_RS10520 0.15 +0.3
1,829,714 - SGL_RS10520 0.17 +0.5
1,829,820 + SGL_RS10520 0.28 +0.4
1,829,938 + SGL_RS10520 0.41 +0.3
1,830,065 - SGL_RS10520 0.54 +0.3
1,830,200 + SGL_RS10520 0.68 +0.6
1,830,347 + SGL_RS10520 0.84 -0.7
1,830,669 + -0.5
1,830,675 - +0.1
1,830,740 + SGL_RS10525 0.13 +0.3
1,830,899 - SGL_RS10525 0.31 +0.0
1,830,976 + SGL_RS10525 0.40 +0.6
1,831,164 - SGL_RS10525 0.62 -0.4
1,831,169 - SGL_RS10525 0.63 +0.3
1,831,174 - SGL_RS10525 0.63 +1.2
1,831,272 + SGL_RS10525 0.75 -0.4
1,831,280 - SGL_RS10525 0.75 +0.7
1,831,567 - +0.5
1,831,567 - +0.1
1,831,591 + -1.6
1,832,103 - +0.4
1,832,120 + -0.1
1,832,169 + +0.3
1,832,171 + -0.5
1,832,177 - +0.2

Or see this region's nucleotide sequence