Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19610

Experiment: growth in full media supplemented with 3 .M Cl2Co

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11070 and SGL_RS19610 are separated by 30 nucleotidesSGL_RS19610 and SGL_RS11075 are separated by 64 nucleotidesSGL_RS11075 and SGL_RS11080 are separated by 143 nucleotides SGL_RS11070: SGL_RS11070 - DUF2330 domain-containing protein, at 1,942,923 to 1,944,314 _RS11070 SGL_RS19610: SGL_RS19610 - hypothetical protein, at 1,944,345 to 1,944,521 _RS19610 SGL_RS11075: SGL_RS11075 - ABC-2 family transporter protein, at 1,944,586 to 1,945,374 _RS11075 SGL_RS11080: SGL_RS11080 - glycerol-3-phosphate dehydrogenase, at 1,945,518 to 1,947,179 _RS11080 Position (kb) 1944 1945Strain fitness (log2 ratio) -1 0 1at 1943.500 kb on - strand, within SGL_RS11070at 1943.691 kb on + strand, within SGL_RS11070at 1943.803 kb on - strand, within SGL_RS11070at 1943.828 kb on - strand, within SGL_RS11070at 1943.860 kb on + strand, within SGL_RS11070at 1943.878 kb on + strand, within SGL_RS11070at 1943.886 kb on - strand, within SGL_RS11070at 1943.944 kb on - strand, within SGL_RS11070at 1943.951 kb on + strand, within SGL_RS11070at 1943.951 kb on + strand, within SGL_RS11070at 1943.956 kb on + strand, within SGL_RS11070at 1943.963 kb on + strand, within SGL_RS11070at 1943.995 kb on - strand, within SGL_RS11070at 1944.035 kb on - strand, within SGL_RS11070at 1944.431 kb on - strand, within SGL_RS19610at 1944.459 kb on + strand, within SGL_RS19610at 1944.542 kb on - strandat 1944.572 kb on - strandat 1944.933 kb on + strand, within SGL_RS11075at 1944.991 kb on - strand, within SGL_RS11075at 1945.109 kb on - strand, within SGL_RS11075at 1945.109 kb on - strand, within SGL_RS11075at 1945.162 kb on + strand, within SGL_RS11075at 1945.170 kb on - strand, within SGL_RS11075at 1945.175 kb on + strand, within SGL_RS11075at 1945.325 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co
remove
1,943,500 - SGL_RS11070 0.41 -0.6
1,943,691 + SGL_RS11070 0.55 -0.3
1,943,803 - SGL_RS11070 0.63 +0.4
1,943,828 - SGL_RS11070 0.65 -0.2
1,943,860 + SGL_RS11070 0.67 -0.3
1,943,878 + SGL_RS11070 0.69 -0.1
1,943,886 - SGL_RS11070 0.69 -0.3
1,943,944 - SGL_RS11070 0.73 +0.2
1,943,951 + SGL_RS11070 0.74 -0.0
1,943,951 + SGL_RS11070 0.74 -0.2
1,943,956 + SGL_RS11070 0.74 +0.0
1,943,963 + SGL_RS11070 0.75 +0.2
1,943,995 - SGL_RS11070 0.77 +0.1
1,944,035 - SGL_RS11070 0.80 +0.3
1,944,431 - SGL_RS19610 0.49 -1.3
1,944,459 + SGL_RS19610 0.64 -0.8
1,944,542 - +0.3
1,944,572 - -0.2
1,944,933 + SGL_RS11075 0.44 -1.4
1,944,991 - SGL_RS11075 0.51 +0.4
1,945,109 - SGL_RS11075 0.66 +0.4
1,945,109 - SGL_RS11075 0.66 +1.0
1,945,162 + SGL_RS11075 0.73 +1.0
1,945,170 - SGL_RS11075 0.74 +0.5
1,945,175 + SGL_RS11075 0.75 -0.2
1,945,325 - -0.3

Or see this region's nucleotide sequence