Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18350

Experiment: growth in full media supplemented with 3 .M Cl2Co

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS18345 and SGL_RS20050 are separated by 5 nucleotidesSGL_RS20050 and SGL_RS18350 are separated by 25 nucleotidesSGL_RS18350 and SGL_RS18355 are separated by 111 nucleotides SGL_RS18345: SGL_RS18345 - trans-splicing intein-formed DNA polymerase III subunit alpha N-terminal partner DnaE-N, at 3,561,946 to 3,564,639 _RS18345 SGL_RS20050: SGL_RS20050 - hypothetical protein, at 3,564,645 to 3,564,812 _RS20050 SGL_RS18350: SGL_RS18350 - translation elongation factor 4, at 3,564,838 to 3,566,649 _RS18350 SGL_RS18355: SGL_RS18355 - glutathione S-transferase family protein, at 3,566,761 to 3,567,720 _RS18355 Position (kb) 3564 3565 3566 3567Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3564.591 kb on - strandat 3564.693 kb on - strand, within SGL_RS20050at 3565.025 kb on - strand, within SGL_RS18350at 3565.052 kb on - strand, within SGL_RS18350at 3565.053 kb on - strand, within SGL_RS18350at 3565.132 kb on - strand, within SGL_RS18350at 3565.191 kb on + strand, within SGL_RS18350at 3565.197 kb on + strand, within SGL_RS18350at 3565.688 kb on + strand, within SGL_RS18350at 3565.688 kb on + strand, within SGL_RS18350at 3565.718 kb on - strand, within SGL_RS18350at 3565.807 kb on - strand, within SGL_RS18350at 3565.824 kb on + strand, within SGL_RS18350at 3565.832 kb on - strand, within SGL_RS18350at 3566.005 kb on + strand, within SGL_RS18350at 3566.115 kb on + strand, within SGL_RS18350at 3566.115 kb on + strand, within SGL_RS18350at 3566.115 kb on + strand, within SGL_RS18350at 3566.134 kb on - strand, within SGL_RS18350at 3566.303 kb on - strand, within SGL_RS18350at 3566.336 kb on - strand, within SGL_RS18350at 3566.591 kb on + strandat 3566.599 kb on - strandat 3566.758 kb on + strandat 3566.813 kb on + strandat 3566.938 kb on + strand, within SGL_RS18355at 3566.938 kb on + strand, within SGL_RS18355at 3566.951 kb on - strand, within SGL_RS18355at 3567.062 kb on + strand, within SGL_RS18355at 3567.062 kb on + strand, within SGL_RS18355at 3567.062 kb on + strand, within SGL_RS18355at 3567.070 kb on - strand, within SGL_RS18355at 3567.112 kb on + strand, within SGL_RS18355at 3567.173 kb on + strand, within SGL_RS18355at 3567.381 kb on + strand, within SGL_RS18355at 3567.510 kb on + strand, within SGL_RS18355at 3567.597 kb on + strand, within SGL_RS18355at 3567.628 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co
remove
3,564,591 - -0.5
3,564,693 - SGL_RS20050 0.29 +0.3
3,565,025 - SGL_RS18350 0.10 -4.3
3,565,052 - SGL_RS18350 0.12 -2.8
3,565,053 - SGL_RS18350 0.12 -3.4
3,565,132 - SGL_RS18350 0.16 -0.8
3,565,191 + SGL_RS18350 0.19 -3.1
3,565,197 + SGL_RS18350 0.20 -2.1
3,565,688 + SGL_RS18350 0.47 -4.8
3,565,688 + SGL_RS18350 0.47 -3.7
3,565,718 - SGL_RS18350 0.49 -3.6
3,565,807 - SGL_RS18350 0.53 -2.2
3,565,824 + SGL_RS18350 0.54 -3.3
3,565,832 - SGL_RS18350 0.55 -3.5
3,566,005 + SGL_RS18350 0.64 -4.4
3,566,115 + SGL_RS18350 0.70 -2.6
3,566,115 + SGL_RS18350 0.70 -4.4
3,566,115 + SGL_RS18350 0.70 -3.3
3,566,134 - SGL_RS18350 0.72 -1.8
3,566,303 - SGL_RS18350 0.81 -3.6
3,566,336 - SGL_RS18350 0.83 -2.5
3,566,591 + -2.9
3,566,599 - -3.6
3,566,758 + -0.6
3,566,813 + -0.4
3,566,938 + SGL_RS18355 0.18 -0.5
3,566,938 + SGL_RS18355 0.18 +0.0
3,566,951 - SGL_RS18355 0.20 +0.2
3,567,062 + SGL_RS18355 0.31 -0.4
3,567,062 + SGL_RS18355 0.31 +0.1
3,567,062 + SGL_RS18355 0.31 -0.2
3,567,070 - SGL_RS18355 0.32 +0.1
3,567,112 + SGL_RS18355 0.37 -0.7
3,567,173 + SGL_RS18355 0.43 +0.5
3,567,381 + SGL_RS18355 0.65 +0.1
3,567,510 + SGL_RS18355 0.78 +0.3
3,567,597 + SGL_RS18355 0.87 -0.1
3,567,628 - -0.1

Or see this region's nucleotide sequence