Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14340

Experiment: growth in full media supplemented with 3 .M Cl2Co

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14335 and SGL_RS14340 overlap by 8 nucleotidesSGL_RS14340 and SGL_RS14345 are separated by 130 nucleotidesSGL_RS14345 and SGL_RS14350 are separated by 14 nucleotides SGL_RS14335: SGL_RS14335 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 2,670,115 to 2,671,902 _RS14335 SGL_RS14340: SGL_RS14340 - protein phosphatase 2C domain-containing protein, at 2,671,895 to 2,673,970 _RS14340 SGL_RS14345: SGL_RS14345 - VWA domain-containing protein, at 2,674,101 to 2,674,721 _RS14345 SGL_RS14350: SGL_RS14350 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 2,674,736 to 2,676,196 _RS14350 Position (kb) 2671 2672 2673 2674Strain fitness (log2 ratio) -3 -2 -1 0 1at 2671.039 kb on + strand, within SGL_RS14335at 2671.085 kb on + strand, within SGL_RS14335at 2671.338 kb on - strand, within SGL_RS14335at 2671.667 kb on + strand, within SGL_RS14335at 2671.885 kb on - strandat 2671.885 kb on - strandat 2672.012 kb on - strandat 2672.077 kb on + strandat 2672.212 kb on + strand, within SGL_RS14340at 2672.256 kb on - strand, within SGL_RS14340at 2672.492 kb on - strand, within SGL_RS14340at 2672.515 kb on - strand, within SGL_RS14340at 2672.532 kb on + strand, within SGL_RS14340at 2672.540 kb on - strand, within SGL_RS14340at 2672.652 kb on - strand, within SGL_RS14340at 2672.662 kb on + strand, within SGL_RS14340at 2672.670 kb on - strand, within SGL_RS14340at 2672.671 kb on - strand, within SGL_RS14340at 2672.892 kb on + strand, within SGL_RS14340at 2672.942 kb on - strand, within SGL_RS14340at 2673.061 kb on + strand, within SGL_RS14340at 2673.072 kb on + strand, within SGL_RS14340at 2673.092 kb on - strand, within SGL_RS14340at 2673.190 kb on - strand, within SGL_RS14340at 2673.216 kb on + strand, within SGL_RS14340at 2673.221 kb on + strand, within SGL_RS14340at 2673.335 kb on + strand, within SGL_RS14340at 2673.335 kb on + strand, within SGL_RS14340at 2673.487 kb on - strand, within SGL_RS14340at 2673.495 kb on + strand, within SGL_RS14340at 2673.542 kb on - strand, within SGL_RS14340at 2673.753 kb on - strand, within SGL_RS14340at 2673.788 kb on + strandat 2673.881 kb on + strandat 2673.961 kb on - strandat 2673.967 kb on + strandat 2673.980 kb on - strandat 2673.980 kb on - strandat 2674.103 kb on - strandat 2674.215 kb on + strand, within SGL_RS14345at 2674.334 kb on + strand, within SGL_RS14345at 2674.368 kb on + strand, within SGL_RS14345at 2674.368 kb on + strand, within SGL_RS14345at 2674.376 kb on - strand, within SGL_RS14345at 2674.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co
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2,671,039 + SGL_RS14335 0.52 -2.0
2,671,085 + SGL_RS14335 0.54 -1.5
2,671,338 - SGL_RS14335 0.68 -1.5
2,671,667 + SGL_RS14335 0.87 -0.2
2,671,885 - -1.8
2,671,885 - -0.5
2,672,012 - +0.6
2,672,077 + -2.7
2,672,212 + SGL_RS14340 0.15 -1.4
2,672,256 - SGL_RS14340 0.17 -1.2
2,672,492 - SGL_RS14340 0.29 -0.9
2,672,515 - SGL_RS14340 0.30 -2.6
2,672,532 + SGL_RS14340 0.31 -1.5
2,672,540 - SGL_RS14340 0.31 -0.6
2,672,652 - SGL_RS14340 0.36 -0.8
2,672,662 + SGL_RS14340 0.37 -2.4
2,672,670 - SGL_RS14340 0.37 -0.9
2,672,671 - SGL_RS14340 0.37 -0.1
2,672,892 + SGL_RS14340 0.48 -0.8
2,672,942 - SGL_RS14340 0.50 -0.4
2,673,061 + SGL_RS14340 0.56 -3.3
2,673,072 + SGL_RS14340 0.57 -2.5
2,673,092 - SGL_RS14340 0.58 -1.2
2,673,190 - SGL_RS14340 0.62 -2.8
2,673,216 + SGL_RS14340 0.64 -2.3
2,673,221 + SGL_RS14340 0.64 -1.6
2,673,335 + SGL_RS14340 0.69 -1.6
2,673,335 + SGL_RS14340 0.69 -2.4
2,673,487 - SGL_RS14340 0.77 -2.5
2,673,495 + SGL_RS14340 0.77 -2.5
2,673,542 - SGL_RS14340 0.79 -0.1
2,673,753 - SGL_RS14340 0.89 -2.2
2,673,788 + -1.5
2,673,881 + +0.8
2,673,961 - -2.2
2,673,967 + -1.8
2,673,980 - -3.2
2,673,980 - -2.4
2,674,103 - -0.1
2,674,215 + SGL_RS14345 0.18 +1.3
2,674,334 + SGL_RS14345 0.38 -0.2
2,674,368 + SGL_RS14345 0.43 +0.3
2,674,368 + SGL_RS14345 0.43 +0.0
2,674,376 - SGL_RS14345 0.44 +0.4
2,674,724 - +0.0

Or see this region's nucleotide sequence