Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12925

Experiment: growth in full media supplemented with 3 .M Cl2Co

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS12915 and SGL_RS12920 are separated by 279 nucleotidesSGL_RS12920 and SGL_RS12925 are separated by 90 nucleotidesSGL_RS12925 and SGL_RS12930 are separated by 132 nucleotidesSGL_RS12930 and SGL_RS12935 are separated by 181 nucleotides SGL_RS12915: SGL_RS12915 - circularly permuted type 2 ATP-grasp protein, at 2,373,343 to 2,374,788 _RS12915 SGL_RS12920: SGL_RS12920 - hypothetical protein, at 2,375,068 to 2,375,448 _RS12920 SGL_RS12925: SGL_RS12925 - AAA family ATPase, at 2,375,539 to 2,377,044 _RS12925 SGL_RS12930: SGL_RS12930 - DUF1257 domain-containing protein, at 2,377,177 to 2,377,527 _RS12930 SGL_RS12935: SGL_RS12935 - hypothetical protein, at 2,377,709 to 2,378,938 _RS12935 Position (kb) 2375 2376 2377 2378Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2374.557 kb on + strand, within SGL_RS12915at 2374.582 kb on + strand, within SGL_RS12915at 2374.718 kb on + strandat 2374.736 kb on - strandat 2374.812 kb on + strandat 2374.891 kb on + strandat 2374.893 kb on - strandat 2374.893 kb on - strandat 2375.133 kb on - strand, within SGL_RS12920at 2375.135 kb on + strand, within SGL_RS12920at 2375.163 kb on + strand, within SGL_RS12920at 2375.177 kb on - strand, within SGL_RS12920at 2375.465 kb on - strandat 2375.547 kb on - strandat 2375.555 kb on + strandat 2375.577 kb on - strandat 2375.705 kb on + strand, within SGL_RS12925at 2375.730 kb on + strand, within SGL_RS12925at 2375.735 kb on - strand, within SGL_RS12925at 2375.861 kb on + strand, within SGL_RS12925at 2375.966 kb on - strand, within SGL_RS12925at 2375.991 kb on - strand, within SGL_RS12925at 2375.997 kb on - strand, within SGL_RS12925at 2376.045 kb on + strand, within SGL_RS12925at 2376.053 kb on - strand, within SGL_RS12925at 2376.108 kb on - strand, within SGL_RS12925at 2376.212 kb on - strand, within SGL_RS12925at 2376.221 kb on + strand, within SGL_RS12925at 2376.317 kb on - strand, within SGL_RS12925at 2376.417 kb on + strand, within SGL_RS12925at 2376.428 kb on + strand, within SGL_RS12925at 2376.519 kb on + strand, within SGL_RS12925at 2376.854 kb on - strand, within SGL_RS12925at 2376.931 kb on - strandat 2376.947 kb on + strandat 2376.955 kb on - strandat 2376.957 kb on - strandat 2377.389 kb on + strand, within SGL_RS12930at 2377.397 kb on - strand, within SGL_RS12930at 2377.397 kb on - strand, within SGL_RS12930at 2377.475 kb on + strand, within SGL_RS12930at 2377.574 kb on + strandat 2377.616 kb on + strandat 2377.732 kb on + strandat 2377.735 kb on - strandat 2377.740 kb on - strandat 2377.757 kb on - strandat 2377.992 kb on - strand, within SGL_RS12935at 2378.030 kb on - strand, within SGL_RS12935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co
remove
2,374,557 + SGL_RS12915 0.84 -0.5
2,374,582 + SGL_RS12915 0.86 -0.7
2,374,718 + -0.1
2,374,736 - -0.6
2,374,812 + +0.1
2,374,891 + -0.3
2,374,893 - -0.2
2,374,893 - -1.3
2,375,133 - SGL_RS12920 0.17 -1.8
2,375,135 + SGL_RS12920 0.18 -0.3
2,375,163 + SGL_RS12920 0.25 -0.8
2,375,177 - SGL_RS12920 0.29 -1.6
2,375,465 - -4.1
2,375,547 - -0.3
2,375,555 + +0.7
2,375,577 - -2.6
2,375,705 + SGL_RS12925 0.11 -0.6
2,375,730 + SGL_RS12925 0.13 +0.7
2,375,735 - SGL_RS12925 0.13 -2.6
2,375,861 + SGL_RS12925 0.21 -0.8
2,375,966 - SGL_RS12925 0.28 -2.4
2,375,991 - SGL_RS12925 0.30 -0.3
2,375,997 - SGL_RS12925 0.30 -1.1
2,376,045 + SGL_RS12925 0.34 -0.8
2,376,053 - SGL_RS12925 0.34 -0.8
2,376,108 - SGL_RS12925 0.38 -1.1
2,376,212 - SGL_RS12925 0.45 -2.1
2,376,221 + SGL_RS12925 0.45 -3.0
2,376,317 - SGL_RS12925 0.52 -1.8
2,376,417 + SGL_RS12925 0.58 -1.6
2,376,428 + SGL_RS12925 0.59 -0.4
2,376,519 + SGL_RS12925 0.65 -1.8
2,376,854 - SGL_RS12925 0.87 -2.0
2,376,931 - -3.4
2,376,947 + -1.3
2,376,955 - -3.1
2,376,957 - -3.3
2,377,389 + SGL_RS12930 0.60 -2.1
2,377,397 - SGL_RS12930 0.63 -0.8
2,377,397 - SGL_RS12930 0.63 -1.8
2,377,475 + SGL_RS12930 0.85 -1.3
2,377,574 + +0.3
2,377,616 + -0.3
2,377,732 + -0.0
2,377,735 - +0.4
2,377,740 - -0.0
2,377,757 - +0.2
2,377,992 - SGL_RS12935 0.23 -0.1
2,378,030 - SGL_RS12935 0.26 +0.3

Or see this region's nucleotide sequence