Experiment: growth in full media supplemented with 3 .M Cl2Co
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12040 and SGL_RS12045 are separated by 100 nucleotides SGL_RS12045 and SGL_RS12050 are separated by 302 nucleotides SGL_RS12050 and SGL_RS20155 are separated by 138 nucleotides SGL_RS20155 and SGL_RS12055 overlap by 2 nucleotides SGL_RS12055 and SGL_RS12060 are separated by 17 nucleotides
SGL_RS12040: SGL_RS12040 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,151,606 to 2,152,190
_RS12040
SGL_RS12045: SGL_RS12045 - P-II family nitrogen regulator, at 2,152,291 to 2,152,629
_RS12045
SGL_RS12050: SGL_RS12050 - DUF1517 domain-containing protein, at 2,152,932 to 2,153,933
_RS12050
SGL_RS20155: SGL_RS20155 - hypothetical protein, at 2,154,072 to 2,154,206
_RS20155
SGL_RS12055: SGL_RS12055 - DUF6439 family protein, at 2,154,205 to 2,154,498
_RS12055
SGL_RS12060: SGL_RS12060 - phosphoribosylanthranilate isomerase, at 2,154,516 to 2,155,172
_RS12060
Position (kb)
2152
2153
2154 Strain fitness (log2 ratio)
-2
-1
0
1 at 2151.950 kb on + strand, within SGL_RS12040 at 2152.008 kb on - strand, within SGL_RS12040 at 2152.029 kb on - strand, within SGL_RS12040 at 2152.207 kb on - strand at 2152.332 kb on - strand, within SGL_RS12045 at 2152.420 kb on + strand, within SGL_RS12045 at 2152.502 kb on + strand, within SGL_RS12045 at 2152.829 kb on - strand at 2152.843 kb on + strand at 2152.851 kb on - strand at 2152.951 kb on + strand at 2153.077 kb on + strand, within SGL_RS12050 at 2153.388 kb on + strand, within SGL_RS12050 at 2153.393 kb on - strand, within SGL_RS12050 at 2153.393 kb on - strand, within SGL_RS12050 at 2153.457 kb on + strand, within SGL_RS12050 at 2153.498 kb on - strand, within SGL_RS12050 at 2153.499 kb on - strand, within SGL_RS12050 at 2153.548 kb on - strand, within SGL_RS12050 at 2153.568 kb on - strand, within SGL_RS12050 at 2153.745 kb on + strand, within SGL_RS12050 at 2153.745 kb on + strand, within SGL_RS12050 at 2153.825 kb on - strand, within SGL_RS12050 at 2153.927 kb on + strand at 2153.928 kb on + strand at 2153.936 kb on - strand at 2154.170 kb on - strand, within SGL_RS20155 at 2154.260 kb on + strand, within SGL_RS12055 at 2154.362 kb on - strand, within SGL_RS12055 at 2154.403 kb on + strand, within SGL_RS12055 at 2154.411 kb on - strand, within SGL_RS12055 at 2154.411 kb on - strand, within SGL_RS12055 at 2154.464 kb on + strand, within SGL_RS12055 at 2154.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co remove 2,151,950 + SGL_RS12040 0.59 -0.3 2,152,008 - SGL_RS12040 0.69 -0.1 2,152,029 - SGL_RS12040 0.72 -0.0 2,152,207 - +0.5 2,152,332 - SGL_RS12045 0.12 -0.8 2,152,420 + SGL_RS12045 0.38 -0.8 2,152,502 + SGL_RS12045 0.62 -1.2 2,152,829 - -0.6 2,152,843 + -0.4 2,152,851 - -1.4 2,152,951 + -0.7 2,153,077 + SGL_RS12050 0.14 -1.8 2,153,388 + SGL_RS12050 0.46 +0.4 2,153,393 - SGL_RS12050 0.46 -1.5 2,153,393 - SGL_RS12050 0.46 -0.7 2,153,457 + SGL_RS12050 0.52 -2.4 2,153,498 - SGL_RS12050 0.56 -1.3 2,153,499 - SGL_RS12050 0.57 -1.0 2,153,548 - SGL_RS12050 0.61 -0.4 2,153,568 - SGL_RS12050 0.63 -2.2 2,153,745 + SGL_RS12050 0.81 -1.3 2,153,745 + SGL_RS12050 0.81 -1.1 2,153,825 - SGL_RS12050 0.89 -0.6 2,153,927 + +0.1 2,153,928 + -0.5 2,153,936 - -0.4 2,154,170 - SGL_RS20155 0.73 +0.4 2,154,260 + SGL_RS12055 0.19 +0.4 2,154,362 - SGL_RS12055 0.53 +0.2 2,154,403 + SGL_RS12055 0.67 +0.3 2,154,411 - SGL_RS12055 0.70 +0.2 2,154,411 - SGL_RS12055 0.70 +0.2 2,154,464 + SGL_RS12055 0.88 -0.2 2,154,550 + -0.3
Or see this region's nucleotide sequence