Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12050

Experiment: growth in full media supplemented with 3 .M Cl2Co

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12040 and SGL_RS12045 are separated by 100 nucleotidesSGL_RS12045 and SGL_RS12050 are separated by 302 nucleotidesSGL_RS12050 and SGL_RS20155 are separated by 138 nucleotidesSGL_RS20155 and SGL_RS12055 overlap by 2 nucleotidesSGL_RS12055 and SGL_RS12060 are separated by 17 nucleotides SGL_RS12040: SGL_RS12040 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,151,606 to 2,152,190 _RS12040 SGL_RS12045: SGL_RS12045 - P-II family nitrogen regulator, at 2,152,291 to 2,152,629 _RS12045 SGL_RS12050: SGL_RS12050 - DUF1517 domain-containing protein, at 2,152,932 to 2,153,933 _RS12050 SGL_RS20155: SGL_RS20155 - hypothetical protein, at 2,154,072 to 2,154,206 _RS20155 SGL_RS12055: SGL_RS12055 - DUF6439 family protein, at 2,154,205 to 2,154,498 _RS12055 SGL_RS12060: SGL_RS12060 - phosphoribosylanthranilate isomerase, at 2,154,516 to 2,155,172 _RS12060 Position (kb) 2152 2153 2154Strain fitness (log2 ratio) -2 -1 0 1at 2151.950 kb on + strand, within SGL_RS12040at 2152.008 kb on - strand, within SGL_RS12040at 2152.029 kb on - strand, within SGL_RS12040at 2152.207 kb on - strandat 2152.332 kb on - strand, within SGL_RS12045at 2152.420 kb on + strand, within SGL_RS12045at 2152.502 kb on + strand, within SGL_RS12045at 2152.829 kb on - strandat 2152.843 kb on + strandat 2152.851 kb on - strandat 2152.951 kb on + strandat 2153.077 kb on + strand, within SGL_RS12050at 2153.388 kb on + strand, within SGL_RS12050at 2153.393 kb on - strand, within SGL_RS12050at 2153.393 kb on - strand, within SGL_RS12050at 2153.457 kb on + strand, within SGL_RS12050at 2153.498 kb on - strand, within SGL_RS12050at 2153.499 kb on - strand, within SGL_RS12050at 2153.548 kb on - strand, within SGL_RS12050at 2153.568 kb on - strand, within SGL_RS12050at 2153.745 kb on + strand, within SGL_RS12050at 2153.745 kb on + strand, within SGL_RS12050at 2153.825 kb on - strand, within SGL_RS12050at 2153.927 kb on + strandat 2153.928 kb on + strandat 2153.936 kb on - strandat 2154.170 kb on - strand, within SGL_RS20155at 2154.260 kb on + strand, within SGL_RS12055at 2154.362 kb on - strand, within SGL_RS12055at 2154.403 kb on + strand, within SGL_RS12055at 2154.411 kb on - strand, within SGL_RS12055at 2154.411 kb on - strand, within SGL_RS12055at 2154.464 kb on + strand, within SGL_RS12055at 2154.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co
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2,151,950 + SGL_RS12040 0.59 -0.3
2,152,008 - SGL_RS12040 0.69 -0.1
2,152,029 - SGL_RS12040 0.72 -0.0
2,152,207 - +0.5
2,152,332 - SGL_RS12045 0.12 -0.8
2,152,420 + SGL_RS12045 0.38 -0.8
2,152,502 + SGL_RS12045 0.62 -1.2
2,152,829 - -0.6
2,152,843 + -0.4
2,152,851 - -1.4
2,152,951 + -0.7
2,153,077 + SGL_RS12050 0.14 -1.8
2,153,388 + SGL_RS12050 0.46 +0.4
2,153,393 - SGL_RS12050 0.46 -1.5
2,153,393 - SGL_RS12050 0.46 -0.7
2,153,457 + SGL_RS12050 0.52 -2.4
2,153,498 - SGL_RS12050 0.56 -1.3
2,153,499 - SGL_RS12050 0.57 -1.0
2,153,548 - SGL_RS12050 0.61 -0.4
2,153,568 - SGL_RS12050 0.63 -2.2
2,153,745 + SGL_RS12050 0.81 -1.3
2,153,745 + SGL_RS12050 0.81 -1.1
2,153,825 - SGL_RS12050 0.89 -0.6
2,153,927 + +0.1
2,153,928 + -0.5
2,153,936 - -0.4
2,154,170 - SGL_RS20155 0.73 +0.4
2,154,260 + SGL_RS12055 0.19 +0.4
2,154,362 - SGL_RS12055 0.53 +0.2
2,154,403 + SGL_RS12055 0.67 +0.3
2,154,411 - SGL_RS12055 0.70 +0.2
2,154,411 - SGL_RS12055 0.70 +0.2
2,154,464 + SGL_RS12055 0.88 -0.2
2,154,550 + -0.3

Or see this region's nucleotide sequence