Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10340

Experiment: growth in full media supplemented with 3 .M Cl2Co

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS10335 and SGL_RS10340 are separated by 255 nucleotidesSGL_RS10340 and SGL_RS10345 are separated by 93 nucleotidesSGL_RS10345 and SGL_RS10350 are separated by 213 nucleotides SGL_RS10335: SGL_RS10335 - tetratricopeptide repeat protein, at 1,792,784 to 1,793,596 _RS10335 SGL_RS10340: SGL_RS10340 - AGE family epimerase/isomerase, at 1,793,852 to 1,795,027 _RS10340 SGL_RS10345: SGL_RS10345 - secondary thiamine-phosphate synthase enzyme YjbQ, at 1,795,121 to 1,795,564 _RS10345 SGL_RS10350: SGL_RS10350 - DUF3685 domain-containing protein, at 1,795,778 to 1,797,466 _RS10350 Position (kb) 1793 1794 1795 1796Strain fitness (log2 ratio) -3 -2 -1 0 1at 1792.877 kb on + strand, within SGL_RS10335at 1792.884 kb on + strand, within SGL_RS10335at 1792.897 kb on - strand, within SGL_RS10335at 1792.901 kb on + strand, within SGL_RS10335at 1792.902 kb on - strand, within SGL_RS10335at 1792.971 kb on + strand, within SGL_RS10335at 1793.099 kb on + strand, within SGL_RS10335at 1793.116 kb on - strand, within SGL_RS10335at 1793.249 kb on + strand, within SGL_RS10335at 1793.249 kb on + strand, within SGL_RS10335at 1793.264 kb on - strand, within SGL_RS10335at 1793.313 kb on - strand, within SGL_RS10335at 1793.319 kb on - strand, within SGL_RS10335at 1793.483 kb on + strand, within SGL_RS10335at 1793.488 kb on + strand, within SGL_RS10335at 1793.491 kb on - strand, within SGL_RS10335at 1793.501 kb on + strand, within SGL_RS10335at 1793.509 kb on - strand, within SGL_RS10335at 1793.509 kb on - strand, within SGL_RS10335at 1793.513 kb on + strand, within SGL_RS10335at 1793.521 kb on - strandat 1793.526 kb on - strandat 1793.539 kb on + strandat 1793.898 kb on + strandat 1793.906 kb on - strandat 1794.032 kb on + strand, within SGL_RS10340at 1794.184 kb on - strand, within SGL_RS10340at 1794.233 kb on + strand, within SGL_RS10340at 1794.241 kb on - strand, within SGL_RS10340at 1794.323 kb on + strand, within SGL_RS10340at 1794.348 kb on + strand, within SGL_RS10340at 1794.356 kb on - strand, within SGL_RS10340at 1794.401 kb on - strand, within SGL_RS10340at 1794.432 kb on - strand, within SGL_RS10340at 1794.442 kb on + strand, within SGL_RS10340at 1794.470 kb on - strand, within SGL_RS10340at 1794.512 kb on + strand, within SGL_RS10340at 1794.564 kb on + strand, within SGL_RS10340at 1794.572 kb on - strand, within SGL_RS10340at 1794.584 kb on - strand, within SGL_RS10340at 1794.584 kb on - strand, within SGL_RS10340at 1794.621 kb on + strand, within SGL_RS10340at 1794.664 kb on - strand, within SGL_RS10340at 1794.768 kb on - strand, within SGL_RS10340at 1794.797 kb on + strand, within SGL_RS10340at 1794.947 kb on - strandat 1794.986 kb on + strandat 1794.994 kb on - strandat 1795.253 kb on + strand, within SGL_RS10345at 1795.261 kb on - strand, within SGL_RS10345at 1795.430 kb on + strand, within SGL_RS10345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co
remove
1,792,877 + SGL_RS10335 0.11 +0.4
1,792,884 + SGL_RS10335 0.12 -0.2
1,792,897 - SGL_RS10335 0.14 +0.0
1,792,901 + SGL_RS10335 0.14 -0.2
1,792,902 - SGL_RS10335 0.15 +0.6
1,792,971 + SGL_RS10335 0.23 -1.5
1,793,099 + SGL_RS10335 0.39 -0.7
1,793,116 - SGL_RS10335 0.41 +0.5
1,793,249 + SGL_RS10335 0.57 +0.0
1,793,249 + SGL_RS10335 0.57 -0.2
1,793,264 - SGL_RS10335 0.59 +0.2
1,793,313 - SGL_RS10335 0.65 +0.0
1,793,319 - SGL_RS10335 0.66 -0.0
1,793,483 + SGL_RS10335 0.86 +0.4
1,793,488 + SGL_RS10335 0.87 -0.2
1,793,491 - SGL_RS10335 0.87 -0.1
1,793,501 + SGL_RS10335 0.88 +0.3
1,793,509 - SGL_RS10335 0.89 -0.1
1,793,509 - SGL_RS10335 0.89 +0.2
1,793,513 + SGL_RS10335 0.90 +0.5
1,793,521 - +0.2
1,793,526 - -0.0
1,793,539 + -0.3
1,793,898 + -0.8
1,793,906 - -1.3
1,794,032 + SGL_RS10340 0.15 -0.7
1,794,184 - SGL_RS10340 0.28 -2.2
1,794,233 + SGL_RS10340 0.32 -1.4
1,794,241 - SGL_RS10340 0.33 -2.2
1,794,323 + SGL_RS10340 0.40 -1.2
1,794,348 + SGL_RS10340 0.42 -0.2
1,794,356 - SGL_RS10340 0.43 -1.0
1,794,401 - SGL_RS10340 0.47 -1.1
1,794,432 - SGL_RS10340 0.49 -0.6
1,794,442 + SGL_RS10340 0.50 -0.6
1,794,470 - SGL_RS10340 0.53 -1.3
1,794,512 + SGL_RS10340 0.56 -0.9
1,794,564 + SGL_RS10340 0.61 -3.1
1,794,572 - SGL_RS10340 0.61 -1.7
1,794,584 - SGL_RS10340 0.62 -0.9
1,794,584 - SGL_RS10340 0.62 -0.0
1,794,621 + SGL_RS10340 0.65 -0.7
1,794,664 - SGL_RS10340 0.69 -1.2
1,794,768 - SGL_RS10340 0.78 -1.3
1,794,797 + SGL_RS10340 0.80 -1.2
1,794,947 - -1.7
1,794,986 + -1.1
1,794,994 - -0.8
1,795,253 + SGL_RS10345 0.30 +0.1
1,795,261 - SGL_RS10345 0.32 +0.3
1,795,430 + SGL_RS10345 0.70 -0.6

Or see this region's nucleotide sequence