Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07995

Experiment: growth in full media supplemented with 3 .M Cl2Co

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07990 and SGL_RS07995 are separated by 217 nucleotidesSGL_RS07995 and SGL_RS08000 overlap by 8 nucleotides SGL_RS07990: SGL_RS07990 - diguanylate cyclase, at 1,306,436 to 1,309,264 _RS07990 SGL_RS07995: SGL_RS07995 - RIP metalloprotease RseP, at 1,309,482 to 1,310,582 _RS07995 SGL_RS08000: SGL_RS08000 - endonuclease III, at 1,310,575 to 1,311,234 _RS08000 Position (kb) 1309 1310 1311Strain fitness (log2 ratio) -2 -1 0 1at 1308.522 kb on - strand, within SGL_RS07990at 1308.545 kb on - strand, within SGL_RS07990at 1308.715 kb on + strand, within SGL_RS07990at 1309.165 kb on - strandat 1309.576 kb on + strandat 1309.584 kb on - strandat 1309.698 kb on + strand, within SGL_RS07995at 1309.752 kb on + strand, within SGL_RS07995at 1309.927 kb on + strand, within SGL_RS07995at 1309.935 kb on - strand, within SGL_RS07995at 1309.941 kb on + strand, within SGL_RS07995at 1309.944 kb on - strand, within SGL_RS07995at 1310.024 kb on - strand, within SGL_RS07995at 1310.058 kb on + strand, within SGL_RS07995at 1310.077 kb on + strand, within SGL_RS07995at 1310.077 kb on + strand, within SGL_RS07995at 1310.208 kb on + strand, within SGL_RS07995at 1310.385 kb on + strand, within SGL_RS07995at 1310.435 kb on - strand, within SGL_RS07995at 1310.441 kb on - strand, within SGL_RS07995at 1310.505 kb on - strandat 1310.663 kb on + strand, within SGL_RS08000at 1310.727 kb on - strand, within SGL_RS08000at 1310.753 kb on + strand, within SGL_RS08000at 1310.793 kb on + strand, within SGL_RS08000at 1310.921 kb on + strand, within SGL_RS08000at 1311.051 kb on - strand, within SGL_RS08000at 1311.202 kb on + strandat 1311.202 kb on + strandat 1311.371 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co
remove
1,308,522 - SGL_RS07990 0.74 -0.3
1,308,545 - SGL_RS07990 0.75 +0.1
1,308,715 + SGL_RS07990 0.81 -0.2
1,309,165 - -0.1
1,309,576 + -1.5
1,309,584 - -1.3
1,309,698 + SGL_RS07995 0.20 -0.7
1,309,752 + SGL_RS07995 0.25 -1.2
1,309,927 + SGL_RS07995 0.40 -1.0
1,309,935 - SGL_RS07995 0.41 -0.4
1,309,941 + SGL_RS07995 0.42 -1.7
1,309,944 - SGL_RS07995 0.42 -0.1
1,310,024 - SGL_RS07995 0.49 -2.0
1,310,058 + SGL_RS07995 0.52 -0.8
1,310,077 + SGL_RS07995 0.54 -1.9
1,310,077 + SGL_RS07995 0.54 -1.5
1,310,208 + SGL_RS07995 0.66 -0.9
1,310,385 + SGL_RS07995 0.82 +0.2
1,310,435 - SGL_RS07995 0.87 -1.6
1,310,441 - SGL_RS07995 0.87 -1.7
1,310,505 - -1.0
1,310,663 + SGL_RS08000 0.13 +0.1
1,310,727 - SGL_RS08000 0.23 -0.3
1,310,753 + SGL_RS08000 0.27 -0.2
1,310,793 + SGL_RS08000 0.33 -0.0
1,310,921 + SGL_RS08000 0.52 -0.1
1,311,051 - SGL_RS08000 0.72 +0.3
1,311,202 + +0.0
1,311,202 + +0.1
1,311,371 + -0.1

Or see this region's nucleotide sequence