Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20180

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16630 and SGL_RS20180 are separated by 61 nucleotidesSGL_RS20180 and SGL_RS16640 are separated by 255 nucleotides SGL_RS16630: SGL_RS16630 - MBL fold metallo-hydrolase, at 3,186,379 to 3,188,043 _RS16630 SGL_RS20180: SGL_RS20180 - membrane protein, at 3,188,105 to 3,188,227 _RS20180 SGL_RS16640: SGL_RS16640 - ABC transporter substrate-binding protein, at 3,188,483 to 3,189,748 _RS16640 Position (kb) 3188 3189Strain fitness (log2 ratio) -1 0 1at 3187.154 kb on + strand, within SGL_RS16630at 3187.328 kb on - strand, within SGL_RS16630at 3187.355 kb on + strand, within SGL_RS16630at 3187.363 kb on + strand, within SGL_RS16630at 3187.385 kb on + strand, within SGL_RS16630at 3187.399 kb on + strand, within SGL_RS16630at 3187.399 kb on + strand, within SGL_RS16630at 3187.598 kb on - strand, within SGL_RS16630at 3187.902 kb on + strandat 3187.915 kb on + strandat 3187.933 kb on - strandat 3187.947 kb on + strandat 3187.952 kb on + strandat 3187.977 kb on - strandat 3188.062 kb on + strandat 3188.202 kb on - strand, within SGL_RS20180at 3188.279 kb on + strandat 3188.320 kb on - strandat 3188.544 kb on + strandat 3188.544 kb on + strandat 3188.552 kb on - strandat 3188.552 kb on - strandat 3188.557 kb on - strandat 3188.602 kb on - strandat 3188.633 kb on + strand, within SGL_RS16640at 3188.638 kb on - strand, within SGL_RS16640at 3188.658 kb on + strand, within SGL_RS16640at 3188.721 kb on - strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.889 kb on + strand, within SGL_RS16640at 3189.005 kb on - strand, within SGL_RS16640at 3189.075 kb on - strand, within SGL_RS16640at 3189.120 kb on + strand, within SGL_RS16640at 3189.128 kb on - strand, within SGL_RS16640

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
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3,187,154 + SGL_RS16630 0.47 +0.6
3,187,328 - SGL_RS16630 0.57 +0.1
3,187,355 + SGL_RS16630 0.59 +0.4
3,187,363 + SGL_RS16630 0.59 -0.4
3,187,385 + SGL_RS16630 0.60 -0.3
3,187,399 + SGL_RS16630 0.61 -0.5
3,187,399 + SGL_RS16630 0.61 -0.0
3,187,598 - SGL_RS16630 0.73 -0.3
3,187,902 + -0.4
3,187,915 + -0.1
3,187,933 - -0.3
3,187,947 + -0.3
3,187,952 + -0.1
3,187,977 - -0.4
3,188,062 + -0.1
3,188,202 - SGL_RS20180 0.79 -1.4
3,188,279 + -0.1
3,188,320 - -0.2
3,188,544 + -0.4
3,188,544 + +0.3
3,188,552 - -0.3
3,188,552 - +0.1
3,188,557 - +0.0
3,188,602 - -0.2
3,188,633 + SGL_RS16640 0.12 -0.4
3,188,638 - SGL_RS16640 0.12 -0.2
3,188,658 + SGL_RS16640 0.14 +0.3
3,188,721 - SGL_RS16640 0.19 -0.7
3,188,836 + SGL_RS16640 0.28 +0.4
3,188,836 + SGL_RS16640 0.28 +0.2
3,188,836 + SGL_RS16640 0.28 +0.2
3,188,889 + SGL_RS16640 0.32 -0.1
3,189,005 - SGL_RS16640 0.41 +0.2
3,189,075 - SGL_RS16640 0.47 +0.0
3,189,120 + SGL_RS16640 0.50 -0.5
3,189,128 - SGL_RS16640 0.51 -0.2

Or see this region's nucleotide sequence