Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17650

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17645 and SGL_RS17650 are separated by 165 nucleotidesSGL_RS17650 and SGL_RS17655 are separated by 538 nucleotides SGL_RS17645: SGL_RS17645 - glycoside hydrolase family 57 protein, at 3,413,078 to 3,414,667 _RS17645 SGL_RS17650: SGL_RS17650 - hypothetical protein, at 3,414,833 to 3,415,525 _RS17650 SGL_RS17655: SGL_RS17655 - ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein, at 3,416,064 to 3,416,924 _RS17655 Position (kb) 3414 3415 3416Strain fitness (log2 ratio) -2 -1 0 1at 3413.916 kb on + strand, within SGL_RS17645at 3414.052 kb on - strand, within SGL_RS17645at 3414.075 kb on + strand, within SGL_RS17645at 3414.485 kb on + strand, within SGL_RS17645at 3414.631 kb on - strandat 3414.662 kb on + strandat 3414.664 kb on + strandat 3414.797 kb on + strandat 3414.803 kb on - strandat 3414.814 kb on + strandat 3414.838 kb on + strandat 3414.902 kb on + strandat 3414.910 kb on - strand, within SGL_RS17650at 3415.045 kb on + strand, within SGL_RS17650at 3415.093 kb on + strand, within SGL_RS17650at 3415.257 kb on + strand, within SGL_RS17650at 3415.424 kb on + strand, within SGL_RS17650at 3416.017 kb on + strandat 3416.017 kb on + strandat 3416.017 kb on + strandat 3416.017 kb on + strandat 3416.191 kb on + strand, within SGL_RS17655at 3416.191 kb on + strand, within SGL_RS17655at 3416.199 kb on - strand, within SGL_RS17655at 3416.199 kb on - strand, within SGL_RS17655at 3416.264 kb on + strand, within SGL_RS17655at 3416.454 kb on + strand, within SGL_RS17655at 3416.474 kb on - strand, within SGL_RS17655

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
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3,413,916 + SGL_RS17645 0.53 -0.2
3,414,052 - SGL_RS17645 0.61 -0.8
3,414,075 + SGL_RS17645 0.63 -0.0
3,414,485 + SGL_RS17645 0.88 +0.4
3,414,631 - +0.4
3,414,662 + +0.4
3,414,664 + -0.1
3,414,797 + -0.6
3,414,803 - +0.1
3,414,814 + -0.1
3,414,838 + -0.2
3,414,902 + -1.3
3,414,910 - SGL_RS17650 0.11 -1.6
3,415,045 + SGL_RS17650 0.31 -0.6
3,415,093 + SGL_RS17650 0.38 -2.2
3,415,257 + SGL_RS17650 0.61 -1.6
3,415,424 + SGL_RS17650 0.85 -1.2
3,416,017 + -0.0
3,416,017 + -0.7
3,416,017 + +0.6
3,416,017 + +0.3
3,416,191 + SGL_RS17655 0.15 +0.2
3,416,191 + SGL_RS17655 0.15 +0.1
3,416,199 - SGL_RS17655 0.16 -0.2
3,416,199 - SGL_RS17655 0.16 -1.0
3,416,264 + SGL_RS17655 0.23 -0.0
3,416,454 + SGL_RS17655 0.45 +0.3
3,416,474 - SGL_RS17655 0.48 -0.2

Or see this region's nucleotide sequence