Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17515

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17505 and SGL_RS17510 are separated by 51 nucleotidesSGL_RS17510 and SGL_RS17515 are separated by 42 nucleotidesSGL_RS17515 and SGL_RS17520 are separated by 283 nucleotides SGL_RS17505: SGL_RS17505 - mechanosensitive ion channel, at 3,384,151 to 3,385,590 _RS17505 SGL_RS17510: SGL_RS17510 - hypothetical protein, at 3,385,642 to 3,385,962 _RS17510 SGL_RS17515: SGL_RS17515 - SMC-Scp complex subunit ScpB, at 3,386,005 to 3,386,493 _RS17515 SGL_RS17520: SGL_RS17520 - DUF3352 domain-containing protein, at 3,386,777 to 3,388,465 _RS17520 Position (kb) 3386 3387Strain fitness (log2 ratio) -2 -1 0 1at 3385.054 kb on - strand, within SGL_RS17505at 3385.192 kb on - strand, within SGL_RS17505at 3385.364 kb on - strand, within SGL_RS17505at 3385.368 kb on + strand, within SGL_RS17505at 3385.462 kb on + strandat 3385.462 kb on + strandat 3385.821 kb on + strand, within SGL_RS17510at 3385.917 kb on + strand, within SGL_RS17510at 3386.029 kb on - strandat 3386.091 kb on + strand, within SGL_RS17515at 3386.091 kb on + strand, within SGL_RS17515at 3386.110 kb on - strand, within SGL_RS17515at 3386.133 kb on + strand, within SGL_RS17515at 3386.267 kb on - strand, within SGL_RS17515at 3386.743 kb on + strandat 3387.227 kb on - strand, within SGL_RS17520at 3387.257 kb on - strand, within SGL_RS17520at 3387.355 kb on - strand, within SGL_RS17520at 3387.370 kb on + strand, within SGL_RS17520at 3387.448 kb on + strand, within SGL_RS17520

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
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3,385,054 - SGL_RS17505 0.63 -0.4
3,385,192 - SGL_RS17505 0.72 +0.6
3,385,364 - SGL_RS17505 0.84 -0.1
3,385,368 + SGL_RS17505 0.85 -0.1
3,385,462 + +1.0
3,385,462 + +0.1
3,385,821 + SGL_RS17510 0.56 -0.1
3,385,917 + SGL_RS17510 0.86 +0.0
3,386,029 - +0.1
3,386,091 + SGL_RS17515 0.18 -0.7
3,386,091 + SGL_RS17515 0.18 -0.6
3,386,110 - SGL_RS17515 0.21 -1.2
3,386,133 + SGL_RS17515 0.26 -0.0
3,386,267 - SGL_RS17515 0.54 -0.7
3,386,743 + -1.8
3,387,227 - SGL_RS17520 0.27 -1.3
3,387,257 - SGL_RS17520 0.28 -0.0
3,387,355 - SGL_RS17520 0.34 -1.3
3,387,370 + SGL_RS17520 0.35 -1.0
3,387,448 + SGL_RS17520 0.40 +1.0

Or see this region's nucleotide sequence