Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16860

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16850 and SGL_RS16855 are separated by 242 nucleotidesSGL_RS16855 and SGL_RS16860 are separated by 65 nucleotidesSGL_RS16860 and SGL_RS16865 are separated by 18 nucleotidesSGL_RS16865 and SGL_RS16870 overlap by 4 nucleotides SGL_RS16850: SGL_RS16850 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 3,233,816 to 3,235,186 _RS16850 SGL_RS16855: SGL_RS16855 - DUF4327 family protein, at 3,235,429 to 3,235,680 _RS16855 SGL_RS16860: SGL_RS16860 - small ribosomal subunit biogenesis GTPase RsgA, at 3,235,746 to 3,236,855 _RS16860 SGL_RS16865: SGL_RS16865 - sulfurtransferase TusA family protein, at 3,236,874 to 3,237,128 _RS16865 SGL_RS16870: SGL_RS16870 - molecular chaperone DnaJ, at 3,237,125 to 3,238,258 _RS16870 Position (kb) 3235 3236 3237Strain fitness (log2 ratio) -2 -1 0 1at 3235.295 kb on + strandat 3235.399 kb on + strandat 3235.409 kb on + strandat 3235.491 kb on + strand, within SGL_RS16855at 3235.519 kb on + strand, within SGL_RS16855at 3235.522 kb on - strand, within SGL_RS16855at 3235.524 kb on - strand, within SGL_RS16855at 3235.587 kb on + strand, within SGL_RS16855at 3235.647 kb on + strand, within SGL_RS16855at 3235.989 kb on + strand, within SGL_RS16860at 3235.997 kb on + strand, within SGL_RS16860at 3235.997 kb on + strand, within SGL_RS16860at 3236.005 kb on - strand, within SGL_RS16860at 3236.005 kb on - strand, within SGL_RS16860at 3236.282 kb on + strand, within SGL_RS16860at 3236.297 kb on + strand, within SGL_RS16860at 3236.324 kb on - strand, within SGL_RS16860at 3236.382 kb on + strand, within SGL_RS16860at 3236.568 kb on - strand, within SGL_RS16860at 3236.651 kb on + strand, within SGL_RS16860at 3236.656 kb on + strand, within SGL_RS16860at 3236.857 kb on + strandat 3236.857 kb on + strandat 3236.922 kb on + strand, within SGL_RS16865at 3236.956 kb on - strand, within SGL_RS16865at 3237.134 kb on + strandat 3237.330 kb on + strand, within SGL_RS16870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
remove
3,235,295 + +0.4
3,235,399 + -0.2
3,235,409 + -0.1
3,235,491 + SGL_RS16855 0.25 +0.3
3,235,519 + SGL_RS16855 0.36 -0.1
3,235,522 - SGL_RS16855 0.37 +0.8
3,235,524 - SGL_RS16855 0.38 -0.2
3,235,587 + SGL_RS16855 0.63 +0.0
3,235,647 + SGL_RS16855 0.87 -0.2
3,235,989 + SGL_RS16860 0.22 -2.2
3,235,997 + SGL_RS16860 0.23 -1.1
3,235,997 + SGL_RS16860 0.23 +0.1
3,236,005 - SGL_RS16860 0.23 -1.0
3,236,005 - SGL_RS16860 0.23 -1.7
3,236,282 + SGL_RS16860 0.48 -0.9
3,236,297 + SGL_RS16860 0.50 +0.1
3,236,324 - SGL_RS16860 0.52 -0.7
3,236,382 + SGL_RS16860 0.57 +0.2
3,236,568 - SGL_RS16860 0.74 -1.0
3,236,651 + SGL_RS16860 0.82 -0.4
3,236,656 + SGL_RS16860 0.82 -0.3
3,236,857 + -0.5
3,236,857 + +0.1
3,236,922 + SGL_RS16865 0.19 -0.1
3,236,956 - SGL_RS16865 0.32 -0.1
3,237,134 + +0.5
3,237,330 + SGL_RS16870 0.18 -0.0

Or see this region's nucleotide sequence