Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10320

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10315 and SGL_RS10320 are separated by 192 nucleotidesSGL_RS10320 and SGL_RS10325 are separated by 326 nucleotides SGL_RS10315: SGL_RS10315 - hypothetical protein, at 1,785,835 to 1,788,357 _RS10315 SGL_RS10320: SGL_RS10320 - ribosome biogenesis GTPase Der, at 1,788,550 to 1,789,908 _RS10320 SGL_RS10325: SGL_RS10325 - hypothetical protein, at 1,790,235 to 1,791,353 _RS10325 Position (kb) 1788 1789 1790Strain fitness (log2 ratio) -2 -1 0 1at 1787.647 kb on + strand, within SGL_RS10315at 1787.675 kb on - strand, within SGL_RS10315at 1787.776 kb on - strand, within SGL_RS10315at 1787.847 kb on + strand, within SGL_RS10315at 1787.871 kb on - strand, within SGL_RS10315at 1788.071 kb on - strand, within SGL_RS10315at 1788.071 kb on - strand, within SGL_RS10315at 1788.144 kb on - strandat 1788.202 kb on + strandat 1788.202 kb on + strandat 1788.289 kb on + strandat 1788.296 kb on + strandat 1789.021 kb on + strand, within SGL_RS10320at 1789.100 kb on + strand, within SGL_RS10320at 1789.178 kb on + strand, within SGL_RS10320at 1789.186 kb on - strand, within SGL_RS10320at 1789.369 kb on - strand, within SGL_RS10320at 1789.550 kb on + strand, within SGL_RS10320at 1789.972 kb on + strandat 1790.038 kb on - strandat 1790.232 kb on + strandat 1790.253 kb on - strandat 1790.293 kb on + strandat 1790.538 kb on + strand, within SGL_RS10325at 1790.639 kb on - strand, within SGL_RS10325at 1790.745 kb on + strand, within SGL_RS10325at 1790.846 kb on + strand, within SGL_RS10325at 1790.874 kb on + strand, within SGL_RS10325at 1790.889 kb on - strand, within SGL_RS10325

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
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1,787,647 + SGL_RS10315 0.72 -0.2
1,787,675 - SGL_RS10315 0.73 -0.1
1,787,776 - SGL_RS10315 0.77 -0.1
1,787,847 + SGL_RS10315 0.80 -0.5
1,787,871 - SGL_RS10315 0.81 +0.2
1,788,071 - SGL_RS10315 0.89 +0.2
1,788,071 - SGL_RS10315 0.89 +0.2
1,788,144 - -0.1
1,788,202 + +0.9
1,788,202 + +0.8
1,788,289 + +0.1
1,788,296 + -0.5
1,789,021 + SGL_RS10320 0.35 -1.9
1,789,100 + SGL_RS10320 0.40 -0.4
1,789,178 + SGL_RS10320 0.46 -0.1
1,789,186 - SGL_RS10320 0.47 +0.3
1,789,369 - SGL_RS10320 0.60 -2.1
1,789,550 + SGL_RS10320 0.74 -1.7
1,789,972 + -0.5
1,790,038 - +0.0
1,790,232 + -0.2
1,790,253 - +0.0
1,790,293 + -0.3
1,790,538 + SGL_RS10325 0.27 +0.3
1,790,639 - SGL_RS10325 0.36 +0.3
1,790,745 + SGL_RS10325 0.46 -0.2
1,790,846 + SGL_RS10325 0.55 +0.5
1,790,874 + SGL_RS10325 0.57 +0.1
1,790,889 - SGL_RS10325 0.58 -0.1

Or see this region's nucleotide sequence