Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10155

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10145 and SGL_RS10150 are separated by 243 nucleotidesSGL_RS10150 and SGL_RS10155 are separated by 181 nucleotidesSGL_RS10155 and SGL_RS10160 are separated by 64 nucleotides SGL_RS10145: SGL_RS10145 - cytochrome c, at 1,750,681 to 1,751,067 _RS10145 SGL_RS10150: SGL_RS10150 - 50S ribosomal protein L9, at 1,751,311 to 1,751,769 _RS10150 SGL_RS10155: SGL_RS10155 - hypothetical protein, at 1,751,951 to 1,752,826 _RS10155 SGL_RS10160: SGL_RS10160 - B12-binding domain-containing radical SAM protein, at 1,752,891 to 1,754,501 _RS10160 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -3 -2 -1 0 1at 1751.070 kb on - strandat 1751.070 kb on - strandat 1751.175 kb on - strandat 1751.408 kb on + strand, within SGL_RS10150at 1751.478 kb on - strand, within SGL_RS10150at 1751.649 kb on + strand, within SGL_RS10150at 1751.936 kb on + strandat 1752.017 kb on - strandat 1752.045 kb on - strand, within SGL_RS10155at 1752.330 kb on + strand, within SGL_RS10155at 1752.424 kb on - strand, within SGL_RS10155at 1752.435 kb on + strand, within SGL_RS10155at 1752.451 kb on + strand, within SGL_RS10155at 1752.461 kb on - strand, within SGL_RS10155at 1752.461 kb on - strand, within SGL_RS10155at 1752.692 kb on + strand, within SGL_RS10155at 1752.710 kb on - strand, within SGL_RS10155at 1752.948 kb on + strandat 1752.963 kb on - strandat 1753.034 kb on - strandat 1753.424 kb on - strand, within SGL_RS10160at 1753.426 kb on + strand, within SGL_RS10160at 1753.434 kb on - strand, within SGL_RS10160at 1753.439 kb on - strand, within SGL_RS10160at 1753.479 kb on - strand, within SGL_RS10160

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
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1,751,070 - +0.5
1,751,070 - +0.2
1,751,175 - -0.2
1,751,408 + SGL_RS10150 0.21 -0.0
1,751,478 - SGL_RS10150 0.36 -0.1
1,751,649 + SGL_RS10150 0.74 -0.4
1,751,936 + -0.1
1,752,017 - -2.1
1,752,045 - SGL_RS10155 0.11 -1.7
1,752,330 + SGL_RS10155 0.43 +0.1
1,752,424 - SGL_RS10155 0.54 -2.9
1,752,435 + SGL_RS10155 0.55 -1.7
1,752,451 + SGL_RS10155 0.57 +0.3
1,752,461 - SGL_RS10155 0.58 -0.3
1,752,461 - SGL_RS10155 0.58 -2.7
1,752,692 + SGL_RS10155 0.85 -1.0
1,752,710 - SGL_RS10155 0.87 +0.2
1,752,948 + -0.9
1,752,963 - -1.8
1,753,034 - +1.3
1,753,424 - SGL_RS10160 0.33 +0.3
1,753,426 + SGL_RS10160 0.33 -0.1
1,753,434 - SGL_RS10160 0.34 +0.0
1,753,439 - SGL_RS10160 0.34 +0.6
1,753,479 - SGL_RS10160 0.36 -1.0

Or see this region's nucleotide sequence