Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08080

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08070 and SGL_RS08075 are separated by 71 nucleotidesSGL_RS08075 and SGL_RS08080 are separated by 310 nucleotidesSGL_RS08080 and SGL_RS08085 are separated by 15 nucleotidesSGL_RS08085 and SGL_RS08090 are separated by 253 nucleotides SGL_RS08070: SGL_RS08070 - tocopherol cyclase family protein, at 1,323,672 to 1,324,763 _RS08070 SGL_RS08075: SGL_RS08075 - peroxiredoxin, at 1,324,835 to 1,325,404 _RS08075 SGL_RS08080: SGL_RS08080 - Fur family transcriptional regulator, at 1,325,715 to 1,326,134 _RS08080 SGL_RS08085: SGL_RS08085 - DUF1499 domain-containing protein, at 1,326,150 to 1,326,626 _RS08085 SGL_RS08090: SGL_RS08090 - photosystem II reaction center protein Psb28, at 1,326,880 to 1,327,248 _RS08090 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -2 -1 0 1at 1324.762 kb on + strandat 1324.766 kb on + strandat 1324.776 kb on + strandat 1324.789 kb on - strandat 1324.812 kb on - strandat 1324.841 kb on - strandat 1324.903 kb on - strand, within SGL_RS08075at 1324.903 kb on - strand, within SGL_RS08075at 1324.943 kb on + strand, within SGL_RS08075at 1325.025 kb on - strand, within SGL_RS08075at 1325.238 kb on + strand, within SGL_RS08075at 1325.265 kb on + strand, within SGL_RS08075at 1325.619 kb on + strandat 1325.624 kb on + strandat 1325.632 kb on - strandat 1325.632 kb on - strandat 1325.718 kb on + strandat 1325.718 kb on + strandat 1325.790 kb on - strand, within SGL_RS08080at 1325.886 kb on + strand, within SGL_RS08080at 1325.886 kb on + strand, within SGL_RS08080at 1325.894 kb on - strand, within SGL_RS08080at 1325.897 kb on + strand, within SGL_RS08080at 1326.359 kb on + strand, within SGL_RS08085at 1326.455 kb on + strand, within SGL_RS08085at 1326.575 kb on - strand, within SGL_RS08085at 1326.652 kb on + strandat 1326.735 kb on + strandat 1326.791 kb on + strandat 1326.793 kb on + strandat 1326.835 kb on + strandat 1326.887 kb on + strandat 1326.946 kb on - strand, within SGL_RS08090at 1326.979 kb on + strand, within SGL_RS08090at 1326.987 kb on - strand, within SGL_RS08090at 1327.017 kb on + strand, within SGL_RS08090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
remove
1,324,762 + -0.7
1,324,766 + +0.7
1,324,776 + -0.2
1,324,789 - -0.4
1,324,812 - -0.5
1,324,841 - -0.3
1,324,903 - SGL_RS08075 0.12 +0.1
1,324,903 - SGL_RS08075 0.12 -0.3
1,324,943 + SGL_RS08075 0.19 -0.1
1,325,025 - SGL_RS08075 0.33 -1.3
1,325,238 + SGL_RS08075 0.71 -0.1
1,325,265 + SGL_RS08075 0.75 -0.6
1,325,619 + -1.6
1,325,624 + -0.4
1,325,632 - +0.1
1,325,632 - +0.9
1,325,718 + -0.2
1,325,718 + -0.3
1,325,790 - SGL_RS08080 0.18 -0.6
1,325,886 + SGL_RS08080 0.41 -1.1
1,325,886 + SGL_RS08080 0.41 -0.4
1,325,894 - SGL_RS08080 0.43 -2.3
1,325,897 + SGL_RS08080 0.43 -1.6
1,326,359 + SGL_RS08085 0.44 -0.1
1,326,455 + SGL_RS08085 0.64 +0.1
1,326,575 - SGL_RS08085 0.89 -0.2
1,326,652 + -0.0
1,326,735 + +0.5
1,326,791 + -0.4
1,326,793 + +0.1
1,326,835 + -0.2
1,326,887 + +0.0
1,326,946 - SGL_RS08090 0.18 -0.0
1,326,979 + SGL_RS08090 0.27 +0.3
1,326,987 - SGL_RS08090 0.29 +0.1
1,327,017 + SGL_RS08090 0.37 -0.0

Or see this region's nucleotide sequence