Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06430

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS06425 and SGL_RS06430 are separated by 289 nucleotidesSGL_RS06430 and SGL_RS06435 are separated by 57 nucleotides SGL_RS06425: SGL_RS06425 - ATP-dependent DNA helicase RecQ, at 974,053 to 975,489 _RS06425 SGL_RS06430: SGL_RS06430 - glycosyltransferase family 2 protein, at 975,779 to 976,648 _RS06430 SGL_RS06435: SGL_RS06435 - cobalt-precorrin-5B (C(1))-methyltransferase CbiD, at 976,706 to 977,842 _RS06435 Position (kb) 975 976 977Strain fitness (log2 ratio) -2 -1 0 1at 974.825 kb on + strand, within SGL_RS06425at 974.852 kb on + strand, within SGL_RS06425at 975.047 kb on - strand, within SGL_RS06425at 975.047 kb on - strand, within SGL_RS06425at 975.203 kb on + strand, within SGL_RS06425at 975.211 kb on - strand, within SGL_RS06425at 975.289 kb on - strand, within SGL_RS06425at 975.316 kb on - strand, within SGL_RS06425at 975.376 kb on - strandat 975.461 kb on + strandat 975.572 kb on - strandat 975.840 kb on + strandat 975.982 kb on + strand, within SGL_RS06430at 976.009 kb on + strand, within SGL_RS06430at 976.400 kb on + strand, within SGL_RS06430at 976.801 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
remove
974,825 + SGL_RS06425 0.54 +0.3
974,852 + SGL_RS06425 0.56 +0.1
975,047 - SGL_RS06425 0.69 +0.2
975,047 - SGL_RS06425 0.69 -0.5
975,203 + SGL_RS06425 0.80 -0.5
975,211 - SGL_RS06425 0.81 -0.0
975,289 - SGL_RS06425 0.86 +0.0
975,316 - SGL_RS06425 0.88 -0.3
975,376 - +0.3
975,461 + +0.7
975,572 - -2.6
975,840 + -2.0
975,982 + SGL_RS06430 0.23 -1.5
976,009 + SGL_RS06430 0.26 -0.6
976,400 + SGL_RS06430 0.71 -0.0
976,801 + -2.0

Or see this region's nucleotide sequence