Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06110

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06105 and SGL_RS06110 are separated by 68 nucleotidesSGL_RS06110 and SGL_RS06115 are separated by 287 nucleotides SGL_RS06105: SGL_RS06105 - magnesium transporter, at 904,115 to 905,506 _RS06105 SGL_RS06110: SGL_RS06110 - glycosyltransferase family 4 protein, at 905,575 to 906,762 _RS06110 SGL_RS06115: SGL_RS06115 - DUF1868 domain-containing protein, at 907,050 to 907,826 _RS06115 Position (kb) 905 906 907Strain fitness (log2 ratio) -2 -1 0 1at 904.577 kb on - strand, within SGL_RS06105at 904.582 kb on - strand, within SGL_RS06105at 904.613 kb on + strand, within SGL_RS06105at 904.621 kb on - strand, within SGL_RS06105at 904.621 kb on - strand, within SGL_RS06105at 904.695 kb on + strand, within SGL_RS06105at 904.701 kb on + strand, within SGL_RS06105at 904.783 kb on + strand, within SGL_RS06105at 904.823 kb on - strand, within SGL_RS06105at 904.912 kb on - strand, within SGL_RS06105at 904.928 kb on + strand, within SGL_RS06105at 904.947 kb on - strand, within SGL_RS06105at 904.962 kb on - strand, within SGL_RS06105at 905.037 kb on + strand, within SGL_RS06105at 905.045 kb on - strand, within SGL_RS06105at 905.107 kb on + strand, within SGL_RS06105at 905.115 kb on - strand, within SGL_RS06105at 905.152 kb on + strand, within SGL_RS06105at 905.152 kb on + strand, within SGL_RS06105at 905.160 kb on - strand, within SGL_RS06105at 905.160 kb on - strand, within SGL_RS06105at 905.209 kb on - strand, within SGL_RS06105at 905.261 kb on - strand, within SGL_RS06105at 905.261 kb on - strand, within SGL_RS06105at 905.271 kb on - strand, within SGL_RS06105at 905.279 kb on + strand, within SGL_RS06105at 905.307 kb on + strand, within SGL_RS06105at 905.336 kb on - strand, within SGL_RS06105at 905.346 kb on - strand, within SGL_RS06105at 905.874 kb on - strand, within SGL_RS06110at 905.902 kb on + strand, within SGL_RS06110at 906.346 kb on + strand, within SGL_RS06110at 906.379 kb on + strand, within SGL_RS06110at 906.379 kb on + strand, within SGL_RS06110at 906.463 kb on + strand, within SGL_RS06110at 906.482 kb on - strand, within SGL_RS06110at 906.696 kb on - strandat 906.712 kb on + strandat 906.832 kb on - strandat 907.009 kb on - strandat 907.041 kb on - strandat 907.052 kb on + strandat 907.068 kb on + strandat 907.113 kb on - strandat 907.264 kb on - strand, within SGL_RS06115at 907.319 kb on + strand, within SGL_RS06115at 907.345 kb on + strand, within SGL_RS06115at 907.345 kb on + strand, within SGL_RS06115at 907.353 kb on - strand, within SGL_RS06115at 907.359 kb on - strand, within SGL_RS06115at 907.364 kb on - strand, within SGL_RS06115at 907.431 kb on + strand, within SGL_RS06115at 907.464 kb on - strand, within SGL_RS06115at 907.482 kb on + strand, within SGL_RS06115at 907.557 kb on - strand, within SGL_RS06115at 907.618 kb on - strand, within SGL_RS06115at 907.629 kb on + strand, within SGL_RS06115at 907.630 kb on + strand, within SGL_RS06115at 907.745 kb on + strand, within SGL_RS06115at 907.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
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904,577 - SGL_RS06105 0.33 -0.3
904,582 - SGL_RS06105 0.34 -0.1
904,613 + SGL_RS06105 0.36 +0.3
904,621 - SGL_RS06105 0.36 -0.2
904,621 - SGL_RS06105 0.36 +0.0
904,695 + SGL_RS06105 0.42 -0.5
904,701 + SGL_RS06105 0.42 -0.7
904,783 + SGL_RS06105 0.48 -0.1
904,823 - SGL_RS06105 0.51 -0.5
904,912 - SGL_RS06105 0.57 -0.1
904,928 + SGL_RS06105 0.58 -0.1
904,947 - SGL_RS06105 0.60 -0.2
904,962 - SGL_RS06105 0.61 +0.0
905,037 + SGL_RS06105 0.66 +0.3
905,045 - SGL_RS06105 0.67 -1.1
905,107 + SGL_RS06105 0.71 -0.8
905,115 - SGL_RS06105 0.72 -0.4
905,152 + SGL_RS06105 0.74 -0.4
905,152 + SGL_RS06105 0.74 -0.6
905,160 - SGL_RS06105 0.75 +0.2
905,160 - SGL_RS06105 0.75 -0.0
905,209 - SGL_RS06105 0.79 -0.5
905,261 - SGL_RS06105 0.82 +0.4
905,261 - SGL_RS06105 0.82 -0.1
905,271 - SGL_RS06105 0.83 -0.5
905,279 + SGL_RS06105 0.84 -1.0
905,307 + SGL_RS06105 0.86 -0.2
905,336 - SGL_RS06105 0.88 -0.1
905,346 - SGL_RS06105 0.88 +0.3
905,874 - SGL_RS06110 0.25 -0.9
905,902 + SGL_RS06110 0.28 -2.3
906,346 + SGL_RS06110 0.65 +0.6
906,379 + SGL_RS06110 0.68 -1.7
906,379 + SGL_RS06110 0.68 -0.6
906,463 + SGL_RS06110 0.75 -0.5
906,482 - SGL_RS06110 0.76 +0.4
906,696 - +0.2
906,712 + -0.6
906,832 - -0.8
907,009 - +0.2
907,041 - -0.5
907,052 + -0.6
907,068 + +0.1
907,113 - -1.8
907,264 - SGL_RS06115 0.28 -0.2
907,319 + SGL_RS06115 0.35 +0.2
907,345 + SGL_RS06115 0.38 -0.6
907,345 + SGL_RS06115 0.38 +0.3
907,353 - SGL_RS06115 0.39 +0.2
907,359 - SGL_RS06115 0.40 +0.0
907,364 - SGL_RS06115 0.40 +0.1
907,431 + SGL_RS06115 0.49 -0.5
907,464 - SGL_RS06115 0.53 +0.3
907,482 + SGL_RS06115 0.56 -0.6
907,557 - SGL_RS06115 0.65 +0.0
907,618 - SGL_RS06115 0.73 -0.0
907,629 + SGL_RS06115 0.75 +0.4
907,630 + SGL_RS06115 0.75 -1.1
907,745 + SGL_RS06115 0.89 +0.7
907,751 - +0.3

Or see this region's nucleotide sequence