Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01900

Experiment: growth in full media supplemented with 5mM sodum metaarsenite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01895 and SGL_RS01900 are separated by 182 nucleotidesSGL_RS01900 and SGL_RS01905 are separated by 144 nucleotides SGL_RS01895: SGL_RS01895 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase, at 3,192 to 4,268 _RS01895 SGL_RS01900: SGL_RS01900 - GDP-L-fucose synthase, at 4,451 to 5,389 _RS01900 SGL_RS01905: SGL_RS01905 - GDP-mannose 4,6-dehydratase, at 5,534 to 6,622 _RS01905 Position (kb) 4 5 6Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4.628 kb on + strand, within SGL_RS01900at 4.682 kb on - strand, within SGL_RS01900at 4.878 kb on - strand, within SGL_RS01900at 4.916 kb on + strand, within SGL_RS01900at 5.037 kb on - strand, within SGL_RS01900at 5.178 kb on - strand, within SGL_RS01900at 5.178 kb on - strand, within SGL_RS01900at 5.198 kb on + strand, within SGL_RS01900at 5.237 kb on + strand, within SGL_RS01900at 5.571 kb on + strandat 5.760 kb on - strand, within SGL_RS01905at 5.873 kb on + strand, within SGL_RS01905at 5.917 kb on + strand, within SGL_RS01905at 5.918 kb on - strand, within SGL_RS01905at 5.936 kb on - strand, within SGL_RS01905at 6.026 kb on + strand, within SGL_RS01905at 6.026 kb on + strand, within SGL_RS01905at 6.119 kb on + strand, within SGL_RS01905at 6.132 kb on + strand, within SGL_RS01905at 6.137 kb on + strand, within SGL_RS01905at 6.145 kb on - strand, within SGL_RS01905at 6.145 kb on - strand, within SGL_RS01905at 6.246 kb on + strand, within SGL_RS01905at 6.355 kb on - strand, within SGL_RS01905

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 5mM sodum metaarsenite
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4,628 + SGL_RS01900 0.19 -2.8
4,682 - SGL_RS01900 0.25 -1.8
4,878 - SGL_RS01900 0.45 -1.1
4,916 + SGL_RS01900 0.50 -1.0
5,037 - SGL_RS01900 0.62 -1.8
5,178 - SGL_RS01900 0.77 -4.1
5,178 - SGL_RS01900 0.77 -3.4
5,198 + SGL_RS01900 0.80 -2.0
5,237 + SGL_RS01900 0.84 -1.6
5,571 + -3.7
5,760 - SGL_RS01905 0.21 -1.6
5,873 + SGL_RS01905 0.31 -2.0
5,917 + SGL_RS01905 0.35 -2.9
5,918 - SGL_RS01905 0.35 -3.4
5,936 - SGL_RS01905 0.37 -2.8
6,026 + SGL_RS01905 0.45 -2.2
6,026 + SGL_RS01905 0.45 -4.0
6,119 + SGL_RS01905 0.54 -1.7
6,132 + SGL_RS01905 0.55 -2.3
6,137 + SGL_RS01905 0.55 -3.7
6,145 - SGL_RS01905 0.56 -2.5
6,145 - SGL_RS01905 0.56 -1.0
6,246 + SGL_RS01905 0.65 -2.4
6,355 - SGL_RS01905 0.75 -2.1

Or see this region's nucleotide sequence