Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01270

Experiment: growth in full media supplemented with 300 .M BCSA to remove any trace of Cu

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS01260 and SGL_RS01265 overlap by 4 nucleotidesSGL_RS01265 and SGL_RS01270 are separated by 217 nucleotidesSGL_RS01270 and SGL_RS01275 are separated by 285 nucleotides SGL_RS01260: SGL_RS01260 - putative toxin-antitoxin system toxin component, PIN family, at 23,434 to 23,859 _RS01260 SGL_RS01265: SGL_RS01265 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 23,856 to 24,077 _RS01265 SGL_RS01270: SGL_RS01270 - recombinase family protein, at 24,295 to 24,861 _RS01270 SGL_RS01275: SGL_RS01275 - DUF839 domain-containing protein, at 25,147 to 27,345 _RS01275 Position (kb) 24 25Strain fitness (log2 ratio) -1 0 1 2at 23.774 kb on - strand, within SGL_RS01260at 23.774 kb on - strand, within SGL_RS01260at 23.774 kb on - strand, within SGL_RS01260at 23.774 kb on - strand, within SGL_RS01260at 23.823 kb on + strandat 23.854 kb on + strandat 23.860 kb on - strandat 23.902 kb on + strand, within SGL_RS01265at 23.907 kb on + strand, within SGL_RS01265at 23.910 kb on - strand, within SGL_RS01265at 23.910 kb on - strand, within SGL_RS01265at 23.910 kb on - strand, within SGL_RS01265at 23.962 kb on - strand, within SGL_RS01265at 23.974 kb on + strand, within SGL_RS01265at 23.979 kb on + strand, within SGL_RS01265at 23.987 kb on - strand, within SGL_RS01265at 24.000 kb on + strand, within SGL_RS01265at 24.064 kb on + strandat 24.177 kb on + strandat 24.200 kb on - strandat 24.316 kb on - strandat 24.318 kb on + strandat 24.326 kb on - strandat 24.359 kb on + strand, within SGL_RS01270at 24.411 kb on + strand, within SGL_RS01270at 24.421 kb on + strand, within SGL_RS01270at 24.432 kb on - strand, within SGL_RS01270at 24.444 kb on + strand, within SGL_RS01270at 24.526 kb on + strand, within SGL_RS01270at 24.611 kb on - strand, within SGL_RS01270at 24.620 kb on - strand, within SGL_RS01270at 24.752 kb on + strand, within SGL_RS01270at 24.752 kb on + strand, within SGL_RS01270at 24.937 kb on + strandat 24.944 kb on + strandat 25.007 kb on + strandat 25.150 kb on - strandat 25.209 kb on - strandat 25.214 kb on - strandat 25.410 kb on - strand, within SGL_RS01275at 25.478 kb on - strand, within SGL_RS01275at 25.592 kb on + strand, within SGL_RS01275at 25.682 kb on - strand, within SGL_RS01275at 25.720 kb on + strand, within SGL_RS01275at 25.728 kb on + strand, within SGL_RS01275at 25.737 kb on - strand, within SGL_RS01275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 300 .M BCSA to remove any trace of Cu
remove
23,774 - SGL_RS01260 0.80 +0.3
23,774 - SGL_RS01260 0.80 +0.1
23,774 - SGL_RS01260 0.80 +0.4
23,774 - SGL_RS01260 0.80 +0.4
23,823 + +0.7
23,854 + +0.9
23,860 - -0.4
23,902 + SGL_RS01265 0.21 -0.7
23,907 + SGL_RS01265 0.23 -0.4
23,910 - SGL_RS01265 0.24 +1.9
23,910 - SGL_RS01265 0.24 +0.0
23,910 - SGL_RS01265 0.24 +0.6
23,962 - SGL_RS01265 0.48 -0.1
23,974 + SGL_RS01265 0.53 +2.0
23,979 + SGL_RS01265 0.55 +0.1
23,987 - SGL_RS01265 0.59 +0.2
24,000 + SGL_RS01265 0.65 -0.3
24,064 + -0.1
24,177 + +1.0
24,200 - -0.7
24,316 - -0.6
24,318 + +0.4
24,326 - -0.5
24,359 + SGL_RS01270 0.11 -0.7
24,411 + SGL_RS01270 0.20 -0.1
24,421 + SGL_RS01270 0.22 -0.5
24,432 - SGL_RS01270 0.24 -0.4
24,444 + SGL_RS01270 0.26 -1.2
24,526 + SGL_RS01270 0.41 -1.5
24,611 - SGL_RS01270 0.56 -0.7
24,620 - SGL_RS01270 0.57 +0.7
24,752 + SGL_RS01270 0.81 -0.5
24,752 + SGL_RS01270 0.81 -0.2
24,937 + +1.5
24,944 + -0.3
25,007 + -0.8
25,150 - -0.0
25,209 - +0.3
25,214 - -0.5
25,410 - SGL_RS01275 0.12 -0.7
25,478 - SGL_RS01275 0.15 +1.3
25,592 + SGL_RS01275 0.20 +0.3
25,682 - SGL_RS01275 0.24 -0.3
25,720 + SGL_RS01275 0.26 -0.0
25,728 + SGL_RS01275 0.26 -0.4
25,737 - SGL_RS01275 0.27 +1.5

Or see this region's nucleotide sequence