Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09460

Experiment: growth in full media supplemented with 3 .M CuSO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09455 and SGL_RS09460 are separated by 111 nucleotidesSGL_RS09460 and SGL_RS09465 are separated by 36 nucleotidesSGL_RS09465 and SGL_RS18855 are separated by 26 nucleotides SGL_RS09455: SGL_RS09455 - ABC transporter permease, at 1,621,021 to 1,621,881 _RS09455 SGL_RS09460: SGL_RS09460 - polysaccharide ABC transporter ATP-binding protein, at 1,621,993 to 1,623,093 _RS09460 SGL_RS09465: SGL_RS09465 - IS4-like element IS4Sa family transposase, at 1,623,130 to 1,623,696 _RS09465 SGL_RS18855: SGL_RS18855 - IS630-like element ISTcSa family transposase, at 1,623,723 to 1,624,571 _RS18855 Position (kb) 1621 1622 1623 1624Strain fitness (log2 ratio) -2 -1 0 1at 1621.306 kb on - strand, within SGL_RS09455at 1621.338 kb on + strand, within SGL_RS09455at 1621.430 kb on - strand, within SGL_RS09455at 1621.578 kb on - strand, within SGL_RS09455at 1621.647 kb on - strand, within SGL_RS09455at 1621.683 kb on + strand, within SGL_RS09455at 1621.688 kb on + strand, within SGL_RS09455at 1621.696 kb on - strand, within SGL_RS09455at 1621.728 kb on + strand, within SGL_RS09455at 1621.788 kb on - strand, within SGL_RS09455at 1621.819 kb on + strandat 1621.897 kb on + strandat 1621.939 kb on + strandat 1621.974 kb on + strandat 1621.996 kb on + strandat 1621.996 kb on + strandat 1622.042 kb on + strandat 1622.064 kb on - strandat 1622.089 kb on + strandat 1622.113 kb on + strand, within SGL_RS09460at 1622.113 kb on + strand, within SGL_RS09460at 1622.126 kb on - strand, within SGL_RS09460at 1622.229 kb on - strand, within SGL_RS09460at 1622.241 kb on - strand, within SGL_RS09460at 1622.246 kb on - strand, within SGL_RS09460at 1622.251 kb on + strand, within SGL_RS09460at 1622.299 kb on - strand, within SGL_RS09460at 1622.353 kb on + strand, within SGL_RS09460at 1622.363 kb on - strand, within SGL_RS09460at 1622.468 kb on + strand, within SGL_RS09460at 1622.474 kb on - strand, within SGL_RS09460at 1622.527 kb on + strand, within SGL_RS09460at 1622.595 kb on - strand, within SGL_RS09460

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4
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1,621,306 - SGL_RS09455 0.33 -0.7
1,621,338 + SGL_RS09455 0.37 -0.5
1,621,430 - SGL_RS09455 0.48 +0.0
1,621,578 - SGL_RS09455 0.65 -2.2
1,621,647 - SGL_RS09455 0.73 -0.1
1,621,683 + SGL_RS09455 0.77 -0.7
1,621,688 + SGL_RS09455 0.77 +0.4
1,621,696 - SGL_RS09455 0.78 -0.3
1,621,728 + SGL_RS09455 0.82 +0.4
1,621,788 - SGL_RS09455 0.89 -0.3
1,621,819 + -0.3
1,621,897 + +0.1
1,621,939 + -0.3
1,621,974 + -0.1
1,621,996 + -0.7
1,621,996 + +0.5
1,622,042 + -0.2
1,622,064 - -0.7
1,622,089 + -0.3
1,622,113 + SGL_RS09460 0.11 -0.3
1,622,113 + SGL_RS09460 0.11 -0.1
1,622,126 - SGL_RS09460 0.12 +0.3
1,622,229 - SGL_RS09460 0.21 +0.1
1,622,241 - SGL_RS09460 0.23 +0.1
1,622,246 - SGL_RS09460 0.23 +0.6
1,622,251 + SGL_RS09460 0.23 +0.5
1,622,299 - SGL_RS09460 0.28 +0.7
1,622,353 + SGL_RS09460 0.33 +0.3
1,622,363 - SGL_RS09460 0.34 -0.3
1,622,468 + SGL_RS09460 0.43 -0.6
1,622,474 - SGL_RS09460 0.44 -0.0
1,622,527 + SGL_RS09460 0.49 -0.0
1,622,595 - SGL_RS09460 0.55 -0.2

Or see this region's nucleotide sequence